Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3376 ATGGATCGTTTTGCGGGCACTGTTGGGTCAGGAATGGATATTCCGATCAAGATCATGCATGATAGTGACAGGTATGAGCTTGTGCGTGATATTGGGTCTGGGAATTTTGGTGTGGCTAGGCTCATGAAGGACAAACACACTGGGGAGCTTGTTGCAGTCAAGTATATTGAGAGAGGTGATAAGATAGATGAAAATGTACAAAGGGAAATTATAAATCACAGATCACTGAGGCATCCCAATATTGTCAGGTTCAAGGAGGTAATACTGACCCCTACACATTTAGCTATCGTGATGGAATATGCTTCTGGAGGAGAGCTATTTGAGCGAATATGCAATGCAGGGCGGTTCAATGAGGATGAGGCACGCTTCTTCTTCCAACAGCTTATATCTGGTGTTAGCTACTGTCATTCAATGCAAGTTTGCCATCGTGACTTAAAGTTGGAGAACACATTGCTTGATGGTAGTCCAGCTCCGCGTTTGAAGATTTGTGATTTTGGTTATTCAAAGTCCTCAGTCTTACATTCACAACCAAAATCTACAGTTGGTACCCCTGCATATATCGCTCCTGAAATTTTGCTTAAGAAGGAATATGATGGCAAGCTTGCAGATGTGTGGTCTTGTGGGGTGACTTTATATGTGATGTTGGTGGGCGCATATCCTTTCGAGGATCCTGATGAACCTAAGAATTTCCGGAAGACAATTCATAGGATTATGAAAGTCCAGTACTCAATTCCTGATTATGTTCATGTATCTCCTGAGTGCTGTCATCTTATCTCAAGGATCTTTGTTGCAGACCCTGCACAGAGAATAAGTATTCCCGAGATTCGAAACCATGGGTGGTTTTTGAAGAACCTTCCAGCTGATCTGATGGTTGAGAATGTGAAAATGAACAACCAGTTTCAGGAGCCTGATCAACCAATGCAGAGCAATGAAGAAATCATGCAGATAATTAGTGAGGCTACAATTCCTGCTGCCGGAACTCAGACTCTCGACCAGTATCTGACCGGTGGCTTGGACATTGATGACGACGAGATGGATGAGGACCTCGAATCCGATGCTGACCTTGAAATTGATAGCAGTGGAGAAATAGTATATGCTATGTAA 1104 0.4312 MDRFAGTVGSGMDIPIKIMHDSDRYELVRDIGSGNFGVARLMKDKHTGELVAVKYIERGDKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFNEDEARFFFQQLISGVSYCHSMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEILLKKEYDGKLADVWSCGVTLYVMLVGAYPFEDPDEPKNFRKTIHRIMKVQYSIPDYVHVSPECCHLISRIFVADPAQRISIPEIRNHGWFLKNLPADLMVENVKMNNQFQEPDQPMQSNEEIMQIISEATIPAAGTQTLDQYLTGGLDIDDDEMDEDLESDADLEIDSSGEIVYAM* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3376 367 Gene3D Phosphorylase Kinase; domain 1 7 100 - -
Lja2g3376 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Lja2g3376 367 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2E 15 362 - -
Lja2g3376 367 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Lja2g3376 367 PANTHER SERINE/THREONINE KINASE 15 362 - -
Lja2g3376 367 Pfam Protein kinase domain 25 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g3376 367 CDD STKc_SnRK2-3 24 280 - -
Lja2g3376 367 SUPERFAMILY Protein kinase-like (PK-like) 16 316 IPR011009 -
Lja2g3376 367 ProSiteProfiles Protein kinase domain profile. 25 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g3376 367 SMART serkin_6 25 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g3376 367 Gene3D Transferase(Phosphotransferase) domain 1 101 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3376 Lja-Chr2 77126377 77130982 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3376 24 298 CBL-interacting serine-threonine protein kinases AT5G25110 44.637 3.25e-71 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Lja2g3376 Pkinase 1.5e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3376 K14498 - gmx:100804702 659.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g3376 2 77126377 77130982 Lja2g3376 2 77126377 77130982 ECH