Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3363 ATGAAGTTCCGCCCTATTAGAGATCATCATCAGGATCTTTGCCCACCTAAATTCAATTGGGGAATCCGAGTGAGAGTAGTCCGAAGGTGGATTTTACCAGCTTTGAATTTGAATGATGCATCTATTTCGTTGGAAATGGTTTTCATGGATGAACAAGAGGGTAAAATCCAAGCCTCTTTGGGGAAAGCAATGTTCCGTAAATGGGCTGACAAATTTGTTGAGGGAAATGTTTATGAGATATTCTTTTTCAATGTAATGCCTGCGAAGGGATCTTACCGTGCAGCTAATCATGCCTATAGGATTTTATTTAGTGGTAAGACAAAGGTTGTTCCATTAGAGTGTGAGAGTATACCAAGGTTGGGGTTATCGTTGGTAACCCCGTTACAGCTGGAAACCATTGCAGACCCTTCTGATCATTTAGTTGATGTTGTTGGATTTTTAACTGCGGTGTCCCCTGTTAGAATTGATGTAAAAGGATCCAGCCATGTGAAGATTATGATGATGGAGTTATATGATGAGAATGGTTCGATGTCATTTGTTGTTCTTGGTGATTGTGTAAGTGTTGTAAGTGATTATCTATCTTCACATTCAAAGGAGAAACCTCTTGTGGTTGTGCAGTATGCCAAGATAAAGAAATTTGAAGGGAAGAATTTGTTGCATACCTTAATTCCTGTGTCTACTATACATCTTAATCAAGAATTTGAGGAAGCTAAAGCCTTTAGGAAGAGGATGAATGGACACAGTAGGGAAATTGAAGGTCATGTTGGTGATATTGATTTCTTCGATTTTGCTTATCCAATGATTGATGATGTTAAAATTGTATATCCTTCTGTGGATTTGAAGTATGTAGATTTTGAAGTTAGTGTGTACCAACGATTTAGGGGAGAACCTGTTATTGATTATGCTGATGATGGATGTTTTGCGGATATGATGAGTGCATGTGATGTTGAGATGTTATATGAAGAAAGCGATATGATGGAGCTATATGAATCCTCCTCATTTTTTCAGAGTTATATGATGTCCAAGTATTTTGCTACCCCAGCAATTGTGGAACTTGATGAGGTGGCTGATGTCCTTCTTCATTTCCATGATCCAGATGGTGTGTCGAGTCAGTGCAAATTTTAA 1125 0.3831 MKFRPIRDHHQDLCPPKFNWGIRVRVVRRWILPALNLNDASISLEMVFMDEQEGKIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVPLECESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSPVRIDVKGSSHVKIMMMELYDENGSMSFVVLGDCVSVVSDYLSSHSKEKPLVVVQYAKIKKFEGKNLLHTLIPVSTIHLNQEFEEAKAFRKRMNGHSREIEGHVGDIDFFDFAYPMIDDVKIVYPSVDLKYVDFEVSVYQRFRGEPVIDYADDGCFADMMSACDVEMLYEESDMMELYESSSFFQSYMMSKYFATPAIVELDEVADVLLHFHDPDGVSSQCKF* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3363 374 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-LIKE 12 243 - -
Lja2g3363 374 SUPERFAMILY Nucleic acid-binding proteins 12 112 IPR012340 -
Lja2g3363 374 Pfam Domain of unknown function DUF223 45 111 IPR003871 -
Lja2g3363 374 SUPERFAMILY Nucleic acid-binding proteins 136 249 IPR012340 -
Lja2g3363 374 CDD RPA1_DBD_B_like 142 244 - -
Lja2g3363 374 PANTHER REPLICATION FACTOR A 1, RFA1 12 243 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lja2g3363 374 Gene3D - 116 253 IPR012340 -
Lja2g3363 374 CDD RPA1_DBD_A_like 22 109 - -
Lja2g3363 374 Gene3D - 11 113 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3363 Lja-Chr2 76563451 76566356 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3363 13 242 Core DNA Replication Machinery Family AT5G45400 25.424 9.33e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3363 - - lja:Lj0g3v0101139.1 685.641