Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3362 ATGATAAAGTTACACAGATGGGTCTTCTTGGCAACCTGCAAAGCCACCACCAAGCCACCGTCCCATCTCCACAACTTTCCTCCACCTTCCATCACCTCCCCTCCACTGCACCCATATTCCGCTCTCATTCCCTCTCGTTCCCCAACCGCAACCAAACCTCCTCATTCCTTCCACCAACACGAGATTTTCTTGATGGCATCTGCTGCTCCAATTGACGCTGTTTCTTCAATTTGTCCTCCAAAACACCATTGGAGGATTAAAGTGAGGGTTGTTCATAAGTGGATTGCGGATTCATTTGGGGGTGAGAGCAAACCCGCTACCCTCGAGTTGATTTTGATGGATCAATATGGTGGGAAGATTCAGGCAACAGTGAGGAAGATTATGTTCCGTAAATGGGCTGAGTTATTTGTTGAAGGAAATGTCTACGTGATTTCCTTTTTCCATTTGATTGGGAATATTGGATCATACCGTCCTACTCAACACCCATTTAGGATTTTGTTCAACACCAAAACAAATGTTCACCCAGCTGAGAGCAGTTTAATTCCCAGGTGGGGGTTTTCGTTGAAGAATGCTGAAGAACTCAATGATGATGGGGCGCAGTCAGAGTTTTTAGTTGATATGTTGGGTATACTGACTGCAACTTCTGAGGAGAGGACATATGTGAAGGATGGAATTGTGACTAAGCTGATGCTGTTGGAAATTAGTGATGAGAAGGGGACTGTAGAATGTGCTTTGTTTGGGGATTATGTGCAGATTGTTTCTGATTTTCTTGCTGGTAACACGAATGGGAAACCGATAGTGGTTTTTCAGCTTGCTAAACTTAAGACTTTTAGAGGTATTAGTCACTATTGA 852 0.439 MIKLHRWVFLATCKATTKPPSHLHNFPPPSITSPPLHPYSALIPSRSPTATKPPHSFHQHEIFLMASAAPIDAVSSICPPKHHWRIKVRVVHKWIADSFGGESKPATLELILMDQYGGKIQATVRKIMFRKWAELFVEGNVYVISFFHLIGNIGSYRPTQHPFRILFNTKTNVHPAESSLIPRWGFSLKNAEELNDDGAQSEFLVDMLGILTATSEERTYVKDGIVTKLMLLEISDEKGTVECALFGDYVQIVSDFLAGNTNGKPIVVFQLAKLKTFRGISHY* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3362 283 CDD RPA1_DBD_A_like 85 173 - -
Lja2g3362 283 Pfam Domain of unknown function DUF223 109 177 IPR003871 -
Lja2g3362 283 PANTHER REPLICATION FACTOR A 1, RFA1 61 281 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lja2g3362 283 SUPERFAMILY Nucleic acid-binding proteins 70 177 IPR012340 -
Lja2g3362 283 Gene3D - 181 282 IPR012340 -
Lja2g3362 283 Gene3D - 69 178 IPR012340 -
Lja2g3362 283 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 61 281 - -
Lja2g3362 283 SUPERFAMILY Nucleic acid-binding proteins 189 281 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3362 Lja-Chr2 76545696 76561229 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3362 8 281 Core DNA Replication Machinery Family AT2G06510 23.473 9.23e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3362 - - lja:Lj0g3v0101129.2 226.483