Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3353 ATGGGACGTGTGATCCGTGCTCAGCGTAAAGGTGCAGGCTCCGTGTTCAAATCTCACACCCACCACCGCAAGGGACCGGCAAGGTTCCGCAGCCTCGACTTCGGGGAACGGAACGGTTACCTCAAAGGTGTTGTCACCGACGTGATCCACGACCCCGGTCGCGGTGCGCCGCTCGCCAAGGTCGCATTCCGCCACCCCTTCCGTTACAAGAAGCAGAACGAGCTCTTCGTTGCCGCCGAGGGAATATACACCGGCCAGTTCATCTTCTGCGGGAAGAAAGCCACCCTTGTCGTCGGTAACGTCCTTCCCATCAGGTCTATCCCTGAAGGTGCCGTTATCTGCAACGTCGAGCACCACGTTGGCGATCGCGGTGTGTTTGCTAGGTGCTCTGGTGATTACGCCATTCTTCCATCTGGTGCGAAGAAGATTGTTCCGAGTGACTGTAGGGCGATGATTGGGCAAGTTGCGGGTGGTGGGAGAACTGAGAAGCCTCTTCTGAAGGCTGGTAATGCTTACCACAAGTTTAGGGTGAAGAGAAATTGCTGGCCGAAGGTGCGTGGTGTTGCTATGAACCCTGTTGAGCATCCTCATGGAGGAGGTAATCACCAGCACATTGGGCATGCGAGTACTGTTAGACGTGATGCTCCACCTGGGCAGAAGGTTGGTCTCATTGCTGCCAAGAGGACTGGTCGTCTTAGGGGGCAAGCTGCTGCAACTGCTGCTAAAGCTGATAAGGTCTAA 741 0.5574 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDVIHDPGRGAPLAKVAFRHPFRYKKQNELFVAAEGIYTGQFIFCGKKATLVVGNVLPIRSIPEGAVICNVEHHVGDRGVFARCSGDYAILPSGAKKIVPSDCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAAKRTGRLRGQAAATAAKADKV* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3353 246 Pfam Ribosomal Proteins L2, C-terminal domain 98 211 IPR022669 GO:0003735|GO:0005840|GO:0006412
Lja2g3353 246 SUPERFAMILY Translation proteins SH3-like domain 99 232 IPR008991 -
Lja2g3353 246 Gene3D - 1 86 IPR012340 -
Lja2g3353 246 SMART Ribosomal_L2_2 11 90 IPR002171 GO:0003735|GO:0005840|GO:0006412
Lja2g3353 246 MobiDBLite consensus disorder prediction 196 216 - -
Lja2g3353 246 PANTHER RIBOSOMAL PROTEIN L2 1 245 IPR002171 GO:0003735|GO:0005840|GO:0006412
Lja2g3353 246 ProSitePatterns Ribosomal protein L2 signature. 183 194 IPR022671 GO:0003735|GO:0005840|GO:0006412
Lja2g3353 246 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 1 241 IPR002171 GO:0003735|GO:0005840|GO:0006412
Lja2g3353 246 Pfam Ribosomal Proteins L2, RNA binding domain 13 89 IPR022666 GO:0003735|GO:0005840|GO:0006412
Lja2g3353 246 Gene3D Ribosomal protein L2, domain 3 156 233 IPR014726 -
Lja2g3353 246 SMART Ribosomal_L2_C_2 96 217 IPR022669 GO:0003735|GO:0005840|GO:0006412
Lja2g3353 246 SUPERFAMILY Nucleic acid-binding proteins 1 97 IPR012340 -
Lja2g3353 246 PANTHER 60S RIBOSOMAL PROTEIN L8 1 245 - -
Lja2g3353 246 Gene3D - 90 155 IPR014722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3353 Lja-Chr2 76147764 76148546 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3353 1 244 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 87.209 6.43e-167 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3353 K02938 - gmx:100802137 471.47