Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3348 ATGACTCCAAACTTGAAGCTGGAAGCTGAAAATAATTTAGAAGGAAGAAGCCAAGTAGGTTCCAATAACAGTGCCACCACTTCTGATGCTGATCCAGGTTCTGTTTCCCTTGACTTGACCCTCAACTTCAGTCCCAGTGATGAAATTGAAGAGTTGAAAGACACAAATGACACTAACAGTGAAGCGGGAGCTGAGGATCATGCATCTTCACTACCTTCAATTCATAGAATTTTCTCTTGTAATTACTGTAGGAGGAAATTCTTTAGCTCACAGGCATTAGGTGGCCATCAAAATGCTCATAAAAGGGAGAGGACAATGACGAAGCGCGCGATGCGAATGGGAATGTTCACTGAAAGGTATACAAGCCTAGCATCTCTGCCAAGGTTGTCAGACTCGTGA 399 0.4336 MTPNLKLEAENNLEGRSQVGSNNSATTSDADPGSVSLDLTLNFSPSDEIEELKDTNDTNSEAGAEDHASSLPSIHRIFSCNYCRRKFFSSQALGGHQNAHKRERTMTKRAMRMGMFTERYTSLASLPRLSDS* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3348 132 MobiDBLite consensus disorder prediction 1 40 - -
Lja2g3348 132 MobiDBLite consensus disorder prediction 14 40 - -
Lja2g3348 132 MobiDBLite consensus disorder prediction 51 70 - -
Lja2g3348 132 Gene3D Classic Zinc Finger 52 125 - -
Lja2g3348 132 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 105 IPR013087 -
Lja2g3348 132 PANTHER ZINC FINGER PROTEIN 3-RELATED 15 127 - -
Lja2g3348 132 PANTHER ZINC FINGER PROTEIN JAGGED 15 127 IPR045320 GO:0003700
Lja2g3348 132 SUPERFAMILY beta-beta-alpha zinc fingers 76 106 IPR036236 -
Lja2g3348 132 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3348 Lja-Chr2 75983862 75984260 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3348 35 120 C2H2 Transcription Factor Family AT1G24625 57.471 1.07e-23 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja2g3348 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3348 - - lja:Lj0g3v0089139.1 214.542