Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3347 ATGTTGAATGCAAGTGGTCAGAAACTGACTACCAATGATGCCTTATCATATCTCAAGGCAGTGAAGGATATGTTTGAGGATGACAAGGACATGTATGATGAGTTTTTGGAGGTCATGAAGGATTTCAAGGCCCAAAGAATTGATACTGTAGGTGTTATAGCAAGAGTGAAGGAACTGTTTGAAGGGCACAGAGATCTGATATTGGGATTTAACACCTTCTTGCCTAAGGGATATGAAATCACGCTTCCACTAGGGGATGAACAACCTCCTGCAAAGAAGCCTGTTGAATTTGAAGAAGCTATAAGTTTTGTGAACAAGATAAAAGCTCGATTTGAAGGTGATGATCATGTTTACAAGTCTTTTCTAGACATATTGAACATGTACAGAAAGGAAAATAAGTGTATCAATGAGGTCTACCATGAGGTTGCAGTACTTTTCCAAGGCCATGCTGATCTTCTTGATGAGTTTACCCATTTTCTTCCGGACGCTTCTGCTGCTGCCTCTAGTTATTATACGTCTGCTCGAAATTATGTGCTTCGTGATAGGAGATCTGCAATGCCAACAGTGCGGCAAGCGCATGTTGTTAAGAGAGAAAGGACTACGGTTTCACACTGTGATCGTGACCCCAGTGTAAACCGTCCTGACCCAGATCATGACAGAGGTTTGTTGAGGGCAGAAAAGGAGCAGAGGAGACGTGTAGAGAAGGAAAAGGACCATAGAGAAGATGGCAAGAGAGATTGGGAAAGGGATGGCAGAGATCATGAGCATGACGGGGGTCGGTATAGGGAGCGGTTATCCCACAAACGGAAATCTGATCGTAAGGCTGAAGACTTTGGAGCTGAACCATTGCTTGATGCAGATGGATTTTTTGGTACGCGCCCTATGTCATCTACTTGTGATGATAAAAAAATCTCTGAAAACAAAGTACCCTGA 933 0.4309 MLNASGQKLTTNDALSYLKAVKDMFEDDKDMYDEFLEVMKDFKAQRIDTVGVIARVKELFEGHRDLILGFNTFLPKGYEITLPLGDEQPPAKKPVEFEEAISFVNKIKARFEGDDHVYKSFLDILNMYRKENKCINEVYHEVAVLFQGHADLLDEFTHFLPDASAAASSYYTSARNYVLRDRRSAMPTVRQAHVVKRERTTVSHCDRDPSVNRPDPDHDRGLLRAEKEQRRRVEKEKDHREDGKRDWERDGRDHEHDGGRYRERLSHKRKSDRKAEDFGAEPLLDADGFFGTRPMSSTCDDKKISENKVP* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3347 310 Gene3D Paired amphipathic helix 91 164 IPR036600 GO:0006355
Lja2g3347 310 Gene3D Paired amphipathic helix 13 75 IPR036600 GO:0006355
Lja2g3347 310 ProSiteProfiles PAH domain profile. 7 77 IPR003822 GO:0006355
Lja2g3347 310 SUPERFAMILY PAH2 domain 89 162 IPR036600 GO:0006355
Lja2g3347 310 MobiDBLite consensus disorder prediction 192 281 - -
Lja2g3347 310 MobiDBLite consensus disorder prediction 188 310 - -
Lja2g3347 310 SUPERFAMILY PAH2 domain 6 76 IPR036600 GO:0006355
Lja2g3347 310 PANTHER SIN3B-RELATED 3 280 IPR039774 GO:0003714
Lja2g3347 310 ProSiteProfiles PAH domain profile. 93 163 IPR003822 GO:0006355
Lja2g3347 310 Pfam Paired amphipathic helix repeat 31 74 IPR003822 GO:0006355
Lja2g3347 310 Pfam Paired amphipathic helix repeat 116 160 IPR003822 GO:0006355
Lja2g3347 310 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 3 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3347 Lja-Chr2 75974065 75976734 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3347 9 112 WRKY Transcription Factor Family AT4G12020 51.923 9.09e-24 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja2g3347 PAH 3.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3347 K11644 - gmx:100817626 465.307