Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3340 ATGCAAAAGCAAAAACCAATCTCACTGCAAAACACCCATGTCAAGCTTCTCGCCTTCGATCTCCTCTCTCTCACTCCAAACCCTTATTCTTCAGATCCATCCTCCACTTTCTACCGCAGAGGCATCCCTCTCACACGCGCAGAAACCGTCGGCACCGTCACGCTCCGCGACCACAAGCCCAACAGGTTCCTCAGGTTCGCCATCGACGACGGCACCGGGTGCATCCCCTGCATCCTCTGGCTCAACCAACTCTCGTCCCCGCATCTCGCACGCCGCCGGAGCCCGCAGGATCTCCGTCTGATCGCCGACGCAGCTGAGAGCTCCGCCGCGCTGGTGAAGGTGGGGGTGGTTGCGAGGGTGAGGGGGCGGATCACGGCGTTTAGGGGTTCGGTGCAGATGACGGTTTCGGATGTTGTGTTGGAGAGGGACCCGAATGCTGAAATGGTTCACTGGATTGAGTGTGTTAACTTGGCTCGTAATTGTTATAATGTTTTGCCTCAACCCTCTTCTGCTTCTGCATCATCACACCCCAAGTAG 537 0.568 MQKQKPISLQNTHVKLLAFDLLSLTPNPYSSDPSSTFYRRGIPLTRAETVGTVTLRDHKPNRFLRFAIDDGTGCIPCILWLNQLSSPHLARRRSPQDLRLIADAAESSAALVKVGVVARVRGRITAFRGSVQMTVSDVVLERDPNAEMVHWIECVNLARNCYNVLPQPSSASASSHPK* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3340 178 Pfam OB-fold nucleic acid binding domain 50 139 IPR004365 GO:0003676
Lja2g3340 178 Gene3D - 8 165 IPR012340 -
Lja2g3340 178 PANTHER REPLICATION PROTEIN A-RELATED 8 167 IPR040260 -
Lja2g3340 178 PANTHER CST COMPLEX SUBUNIT STN1 8 167 - -
Lja2g3340 178 SUPERFAMILY Nucleic acid-binding proteins 33 156 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3340 Lja-Chr2 75809502 75810263 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3340 30 157 Core DNA Replication Machinery Family AT2G24490 30.469 7.77e-11 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3340 K23312 - vvi:100852748 215.312