Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3338 ATGGGTCTTAGCTTGAAGATGCAGAGTCACCATGATCAAATGGGGTCTAAAAGAAAGTACACTTTCATTCAGGACCATAGAGCATGGCTACCGTGGTTTTTGTTTATGTGGGTCCTGCTAATGGCTTTTATCAGTTGGAATATCTATAGTAAAATGGATGATGACACTAAAGTTAGAAGGAAAGAGGTGTTGGGTAGCCTCTGTGATCAAAGGGCAAGAATGTTGCAAGATCAGTTTAGTGTTAGTGTGAACCATGTCCATGCTCTTGCCATCCTTGTTTCAACTTTCCATTATTACAGAAACCCTTCCGCCATTGATGAGGAAACCTTTGCTGAGTATACAGCAAGAACAGCATTTGAACGGCCATTACTGAGTGGTGTGGCTTACGCACAAAGAGTAATTAACTCAGAGAGAGAGAGATTTGAGAAGCAACACGGATGGGTTATAAAGACAATGGAAAGGGAGTCTTCACAGGTTAGAGATGAGTATGCACCAGTGATATTTGCTCAAGAAACTGTCTCATACCTTGAGTCTCTTGATATGATGTCTGGGGAGGAGGACCAAGAGAACATTTTAAGGGCTAGGGCCACTGGGAAAGCAGTTCTAACAAGTCCTTTCAGGCTGTTGGGTTCTCATCATCTTGGCGTTGTTTTAACATTTCCTGTGTACAAATCTAAGCTCCCTCCAAAGCCAACACTAGAAGAACGCATTGAAGCAACTGCAGGATATGTTGGAGGATCCTTTGATGTTGAGTCCCTTGTGGAGAATTTACTTGGGCAACTTGCTGGTAACCAAGCAATTTTGGTGAATGTGTATGATATCACAAATTGTAGTAATCCCCTAACCATGTATGGAAATCACTCCGAAGAAGCTGATATGTCTCTTTCCTATGAAAGCAAACTCGATTTCGGAGATCCATACAGGATACATCAGATGATATGTAGGTATCATCAGAAGGAACCAACAAATTGGGTCGCCCTTACCACGGCAGTCCTATTCTTTGTGATTCTTATATTAGTGGGTTACATTTTATATGAAGCTGGAAATCATATTGTCAAAGTTGAAGATGATTTTCATGAAATGCAGGATTTAAAAGTCCGAGCAGAAGCAGCTGATGTTGCCAAGTCCCAGTTTCTAGCTACAGTCTCTCATGAAATTAGAACACCAATGAATGGCATTTTAGGAATGATGGCTCTACTTCTAGATACAGAATTGAGTTCAACCCAACGAGATTATGCTCAGACTGCTCAAGCATGTGGAAAGGCACTGATAACATTGATAAATGAGGTTCTTGACCGGGCTAAAATTGAAGCTGGCAAGTTAGAGCTAGAGGCTGTTCCATTTGACCTCCGTTCCATACTTGACGACGTCCTTTCTCTTTTCTCTGAGAAGTCTAGACACAAAAGTCTAGAGTTGGCTGTGTTTGTTTCTGATAAAGTCCCAGATATTCTTATGGGAGATCCTGGAAGATTCAGACAAATAATAACAAATCTTGTTGGCAACTCTGTTAAGTTTACTGAGCAAGGACATATATTTGTTAAAGTTCATCTAGAGGATAACATAAATCCCGTAATGAATGGAAAACATGAAACTATTCTGAATGGAGAGTCAGATGAGGTTTTCCATTTATCTGGTGATTGCCATTTCAAAACCTTAAGCGGATGTGAAGCAGTTGATGAACAGAACAGCTGGGAGAATTTTAAGCATCTGATTGCAAATGAAGAACGTTACTTCGATTGTTCAAGTAAAATGGCAGCCACTAGTGAATCATCGGAGCAAGTCAAATTGAGAGTCTGTGTGGAGGACACTGGAACTGGAATTCCTTTCTCAGCCCAGGATACAATATTCATGCCTTTTGTGCAGGCTGACAGCTCAACTTCTCGAAATTACGGCGGTACTGGCATTGGCTTGAGTATCAGTAAATGTCTGGTTGAACTAATGGGTGGTCAGATAAACTTCACAAGCCGGCCCCAGGTCGGGAGCACATTTTCATTTACTGCTGCTTTCGGAATGTTTAAGAAAAATTCAGTTAGTGACATGAAGAAACTAAATTTGGAAGATCTTCCTTCCAGTTTTAGAGGCCTGAAAGTCATAGTGGTCGATGGAAAACCAGTTAGAGCTGCTGTGACTAGATACCATTTAAAGAGACTAGGGATACTCGTTAAAGTTGCAAATAGCATCAGTCAGGCTGTGGCTTTATGTGGGAAAAATGGTTCTTTAACATCAGGAATGTTCCAACCTGATATTATCATGGTTGAGAAGGACACATGGATATCTGGAGAGCATGGAGGTTTCAACATATGGAAGCTGGACTTCAAACAGAATGGACATGTATTTAAGATGCCTAAAATGATCCTTCTGGCAACCAATATTAAGAATACCGAGTTCGACCAAGCTAAGGCCACAGGTTTTACTGATACTGTGATCATGAAGCCTCTGAGATCTAGTATGGTGGCTGCGTGTCTTCAGCAAGTTCTGGGGATAGGGAAGAAGAGGCAGCTAGGACAGGACATGCTGAATGGTTCTTCTTTTCTACAAAGCCTTCTCTACGGAAAGAAAATCTTGGTGGTCGATGACAATGTCGTGAACCGGAGAGTTGCTGCAGGTGCATTAAAAAAGTTTGGAGCTGATGTGAAGTGTGTTGAAAGTGGCAAAGCTGCACTTGAAATGCTTCAATTGCCTCACTGTTTTGATGCTTGCTTCATGGACATTCAAATGCCAGAAATGGACGGATTTGAAGCAACTAGTAAAATTCGTATGATGGAGAGAAAGGCGAATGAGCAGGTGAACGGTGAATTAGGCGAAGGAAATACCCGAAAAAGCGAGTGGCATGTCCCAATACTGGCCATGACAGCTGATGTAATCCATGCTACATATGATAAGTGCTTGAAATGTGGTATGGATGGATATGTTTCAAAGCCATTTGAGGAACAGAAACTCTATCAGGAAGTTGCAAAATTTTTCAAATCCAAAACCATCTCTGACTCATGA 2991 0.4136 MGLSLKMQSHHDQMGSKRKYTFIQDHRAWLPWFLFMWVLLMAFISWNIYSKMDDDTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRNPSAIDEETFAEYTARTAFERPLLSGVAYAQRVINSERERFEKQHGWVIKTMERESSQVRDEYAPVIFAQETVSYLESLDMMSGEEDQENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPKPTLEERIEATAGYVGGSFDVESLVENLLGQLAGNQAILVNVYDITNCSNPLTMYGNHSEEADMSLSYESKLDFGDPYRIHQMICRYHQKEPTNWVALTTAVLFFVILILVGYILYEAGNHIVKVEDDFHEMQDLKVRAEAADVAKSQFLATVSHEIRTPMNGILGMMALLLDTELSSTQRDYAQTAQACGKALITLINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKSLELAVFVSDKVPDILMGDPGRFRQIITNLVGNSVKFTEQGHIFVKVHLEDNINPVMNGKHETILNGESDEVFHLSGDCHFKTLSGCEAVDEQNSWENFKHLIANEERYFDCSSKMAATSESSEQVKLRVCVEDTGTGIPFSAQDTIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFTSRPQVGSTFSFTAAFGMFKKNSVSDMKKLNLEDLPSSFRGLKVIVVDGKPVRAAVTRYHLKRLGILVKVANSISQAVALCGKNGSLTSGMFQPDIIMVEKDTWISGEHGGFNIWKLDFKQNGHVFKMPKMILLATNIKNTEFDQAKATGFTDTVIMKPLRSSMVAACLQQVLGIGKKRQLGQDMLNGSSFLQSLLYGKKILVVDDNVVNRRVAAGALKKFGADVKCVESGKAALEMLQLPHCFDACFMDIQMPEMDGFEATSKIRMMERKANEQVNGELGEGNTRKSEWHVPILAMTADVIHATYDKCLKCGMDGYVSKPFEEQKLYQEVAKFFKSKTISDS* 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3338 996 PANTHER HISTIDINE KINASE 4 16 992 - -
Lja2g3338 996 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 486 667 IPR003594 -
Lja2g3338 996 SMART REC_2 852 984 IPR001789 GO:0000160
Lja2g3338 996 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 360 440 IPR036097 GO:0000155|GO:0007165
Lja2g3338 996 Pfam His Kinase A (phospho-acceptor) domain 374 439 IPR003661 GO:0000155|GO:0007165
Lja2g3338 996 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 428 666 IPR036890 -
Lja2g3338 996 CDD HATPase_EvgS-ArcB-TorS-like 491 667 - -
Lja2g3338 996 ProSiteProfiles Response regulatory domain profile. 853 988 IPR001789 GO:0000160
Lja2g3338 996 SUPERFAMILY CheY-like 691 827 IPR011006 -
Lja2g3338 996 Gene3D - 438 674 IPR036890 -
Lja2g3338 996 CDD REC_hyHK_CKI1_RcsC-like 854 984 - -
Lja2g3338 996 Pfam CHASE domain 104 284 IPR006189 -
Lja2g3338 996 Gene3D CHASE domain 105 320 IPR042240 -
Lja2g3338 996 SUPERFAMILY CheY-like 851 988 IPR011006 -
Lja2g3338 996 ProSiteProfiles CHASE domain profile. 101 313 IPR006189 -
Lja2g3338 996 SMART HKATPase_4 486 671 IPR003594 -
Lja2g3338 996 Gene3D - 52 104 - -
Lja2g3338 996 PRINTS Bacterial sensor protein C-terminal signature 631 649 IPR004358 GO:0016310|GO:0016772
Lja2g3338 996 PRINTS Bacterial sensor protein C-terminal signature 596 610 IPR004358 GO:0016310|GO:0016772
Lja2g3338 996 PRINTS Bacterial sensor protein C-terminal signature 614 624 IPR004358 GO:0016310|GO:0016772
Lja2g3338 996 PRINTS Bacterial sensor protein C-terminal signature 655 668 IPR004358 GO:0016310|GO:0016772
Lja2g3338 996 SMART HisKA_10 374 439 IPR003661 GO:0000155|GO:0007165
Lja2g3338 996 Gene3D - 344 437 - -
Lja2g3338 996 Gene3D - 690 829 - -
Lja2g3338 996 Gene3D - 847 995 - -
Lja2g3338 996 PANTHER TWO-COMPONENT HISTIDINE KINASE 16 992 - -
Lja2g3338 996 CDD HisKA 374 435 IPR003661 GO:0000155|GO:0007165
Lja2g3338 996 Pfam Response regulator receiver domain 854 984 IPR001789 GO:0000160
Lja2g3338 996 ProSiteProfiles Histidine kinase domain profile. 381 671 IPR005467 -
Lja2g3338 996 ProSiteProfiles Response regulatory domain profile. 696 826 IPR001789 GO:0000160
Lja2g3338 996 SMART CHASE_2 101 286 IPR006189 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3338 Lja-Chr2 75726572 75734042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3338 12 996 Histidine Kinase Gene Family AT2G01830 69.830 0.0 1385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja2g3338 HATPase_c 4.3e-30 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3338 K14489 - gmx:100813204 1706.03