Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3330 ATGTTTCTTCGTTTGTGCTTCTATGCATGTCTCTTTCTCCTATTGGGGTTGAGATCAGAACTTGCCAATGCTCAGTTTTTCAGAAAAGTAGGAGACAAGTTCCTTTCTTACTCGAAAATAGTTGTAGATCCATCAGGGCATGGAAACTTCTCTACCATACAATCTGCCATTGATTCAGTGCCTTCCAACAATAGGTATTGGGTTTCCATCAAGGTGAAGGCAGGTACCTACAGAGAAAAAGTGAATATTCCTTATGATAAGCCTTACATCATATTGAAAGGTGAAGGGAAAAGGAAAACTCTTGTTGAATGGGGCGACCATAATTCAACCGCACAGAGCCCAACTTTCACAGCCGTGGCAGATAATGTTGTAGTCAAATGCATGAGCTTCAGGAATTCATACAATAATCCAATAAACAATAATCCCAAGAGGCCTGCAGTTGCTGCAATGGTGAGCGGAGATAAGTCTTACTTTTTAAGAGTTGGGTTCTTTGGCTTGCAAGACACTTTGTGGGATGATAGTGGAAGACATTACTACAAGCTTTGTACCATTCAAGGTGCTGTTGATTTTATCTTTGGTGCAGGACAGTCTTTGTTTGAGAGGTGCTCCATATCAGTTATTGGTGCAGCCTTAGAACCAGGATTTCCTGGTTATATAACAGCACAAGGGAGAACAGAACCAAACGAGGGAAGTGGGTTTGTTTTCAAAGATTGCCACGTATTTGGAAATGGGACAACCTACTTGGGTAGGCCATGGAGAGGTTATGCTAGAGTCTTGTTCTACAACACCAACATGTCCAGCATTGTTCAACCTGGTGGCTGGGAGGCTTGGAATTTCGTTGGACATGAGGATGGCATAACATTTGCTGAGCATGGCAATTTCGGGCCGGGTTCTGACACGTCTAAGCGAGTGAGTTGGGCTAAGAAGTTGGATTTGACTACTGTTTATAAGATGGCAAGTTTGAACTTCATTAACAACCAAGAATGGAGTCAGAACCAAATGTTATTATAA 1011 0.4214 MFLRLCFYACLFLLLGLRSELANAQFFRKVGDKFLSYSKIVVDPSGHGNFSTIQSAIDSVPSNNRYWVSIKVKAGTYREKVNIPYDKPYIILKGEGKRKTLVEWGDHNSTAQSPTFTAVADNVVVKCMSFRNSYNNPINNNPKRPAVAAMVSGDKSYFLRVGFFGLQDTLWDDSGRHYYKLCTIQGAVDFIFGAGQSLFERCSISVIGAALEPGFPGYITAQGRTEPNEGSGFVFKDCHVFGNGTTYLGRPWRGYARVLFYNTNMSSIVQPGGWEAWNFVGHEDGITFAEHGNFGPGSDTSKRVSWAKKLDLTTVYKMASLNFINNQEWSQNQMLL* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3330 336 SUPERFAMILY Pectin lyase-like 39 331 IPR011050 -
Lja2g3330 336 Gene3D - 36 335 IPR012334 -
Lja2g3330 336 PANTHER PECTINESTERASE 10-RELATED 23 334 - -
Lja2g3330 336 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 23 334 - -
Lja2g3330 336 Pfam Pectinesterase 40 324 IPR000070 GO:0030599|GO:0042545
Lja2g3330 336 ProSitePatterns Pectinesterase signature 2. 184 193 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3330 Lja-Chr2 75548193 75552678 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3330 40 283 Carbohydrate Esterase AT2G19150 46.939 8.03e-79 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3330 - - gmx:100819252 513.842