Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3310 ATGGCTGCGCCGTTGCAGAAACGAGTGCACTCCGGCACCAGCTCCGGCGGCTCATATAAGGTTACTTCCGCCCCAGAGTTCCCGGTGGGTCTCAGAGTTCTCGTCGTCGACGATGATACCACCACCTTGAAGATTATTGAGAAAATGTCTATTAGTTGCAATTATCGCGTTACCGCATGCTCTGATGCCACTATTGCTTTGAATCTTCTGCGAGAGAGGAAAGATGATTTTGATGTGGTACTGAGTGATGTTCACATGCCAGACATGGATGGATATAAACTTCTTGAACATGTTGGGTTGGAGATGGATCTTCCTGTTATTATGATGTCTGTTGATGGTAGAACATGTGCTGTCATGAAGGGAATTAGACATGGGGCTTGTGATTATTTAATTAAGCCAGTACGTCTGGAAGAACTGAGGAATATATGGCAGCATGTCGTTAGGAAAATATACAATGAAAATAAAGAACATGCAAATTCTGGTGATGCTAAACATACTTCTTCTATTGAATTGGAGATTGATGACCCATCATCTAAGAAGCCCCGTGTAGTGTGGTCAGTAGATCTGCATGAAAAGTTTGTCAGTGCTGTGATTCAACTTGGGCTTGACAGGGCTGTGCCAAAGAGAATTCTAGAGTTGATGAATGACCCTGACTTAACAAGGGAAAATGTTGCAAGCCATTTGCAGAAATTTAGAATTTATTTGAGGCGATTAAGTGAAGTGGCACGGCAACAGATTGGAATGCTAAATACAGTTCCTGGGACTATAGAATCCAAGTTGAGTGCATCTGGAAGATTTGACATACAAGCTTTGGCTGCTTCTGGCCATGTTCCTCCTGAAACACTTACAGCCATTCAAGCTGAGTTTTTAGGTCACCCCATAACTAACATAATACCTACGGTGGGCCAGATTACCCTTCTCGAAGCATCAAGACAGGGTCCAATACATTCTAATGTTCATCATGGTTTGGCACATGGTCAGCCTCTTGAAAAATGCCCTTCCAACATTGCCAAGAATTTCCCTCAGCCCATCGTTACTTTTGATGGCACATCTTCAAGATATGTTGCATCGCAATCATCCAATACAATTAATTATGTGGGACCAAATAGTAGCGTTGGAAGGTTGGGCGTTCAGAATAATGACATGCTGGTGAATATATTGCGGCACCAACAACAGCAGCAGCACCCGCAACAGCCCTCACCTCTGATACAGGATCAAAGTCAATCAATCAATGTTCAACCATCTCGTGTGGGTTGCAGTTTTGGCAGGAATGCCATAATTGGTTATGGTTCATTGTCAAAATCAAATAAATCATTGAGTACATCTCAATTTACTAGTGGTGATGCCATAATTGGTTATGGTTCTTGTTCAATAGGCTCCACCCATAGCAATATTCCGCAGCTTCAAAACTCAACTTTCATATTTGGTGCTGCGAAACCAATCCCTGAACTTCTGCCTGTTACTGATAGACAAGTTCCCTATGGTGTTAAATATGGTGCTTCACTTGATCAAGCATGTCCTAGCAGTCTTGGATTTGTTGGCAGAGGTACCTGCATTCCAAGTAGGTTTATGGAAAATGAAATTGAATCTTCTGCAGGTGATTTTAGTCAAATGAAAGTATCCGTAGATAGCAATGGTAACACCATGAAGGAGGAGCCAAATTTTATATGA 1671 0.4225 MAAPLQKRVHSGTSSGGSYKVTSAPEFPVGLRVLVVDDDTTTLKIIEKMSISCNYRVTACSDATIALNLLRERKDDFDVVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSVDGRTCAVMKGIRHGACDYLIKPVRLEELRNIWQHVVRKIYNENKEHANSGDAKHTSSIELEIDDPSSKKPRVVWSVDLHEKFVSAVIQLGLDRAVPKRILELMNDPDLTRENVASHLQKFRIYLRRLSEVARQQIGMLNTVPGTIESKLSASGRFDIQALAASGHVPPETLTAIQAEFLGHPITNIIPTVGQITLLEASRQGPIHSNVHHGLAHGQPLEKCPSNIAKNFPQPIVTFDGTSSRYVASQSSNTINYVGPNSSVGRLGVQNNDMLVNILRHQQQQQHPQQPSPLIQDQSQSINVQPSRVGCSFGRNAIIGYGSLSKSNKSLSTSQFTSGDAIIGYGSCSIGSTHSNIPQLQNSTFIFGAAKPIPELLPVTDRQVPYGVKYGASLDQACPSSLGFVGRGTCIPSRFMENEIESSAGDFSQMKVSVDSNGNTMKEEPNFI* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3310 556 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 180 233 IPR006447 GO:0003677
Lja2g3310 556 Gene3D - 177 239 - -
Lja2g3310 556 ProSiteProfiles Response regulatory domain profile. 32 147 IPR001789 GO:0000160
Lja2g3310 556 SUPERFAMILY Homeodomain-like 178 237 IPR009057 -
Lja2g3310 556 PANTHER TWO-COMPONENT RESPONSE REGULATOR 27 421 IPR045279 GO:0009736
Lja2g3310 556 Gene3D - 31 167 - -
Lja2g3310 556 CDD REC_typeB_ARR-like 33 147 - -
Lja2g3310 556 Pfam Response regulator receiver domain 33 142 IPR001789 GO:0000160
Lja2g3310 556 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 27 421 - -
Lja2g3310 556 SMART REC_2 31 143 IPR001789 GO:0000160
Lja2g3310 556 SUPERFAMILY CheY-like 30 157 IPR011006 -
Lja2g3310 556 Pfam Myb-like DNA-binding domain 182 230 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3310 Lja-Chr2 74878896 74882660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3310 26 251 Response Regulator Gene Family AT2G25180 54.118 3.72e-84 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lja2g3310 Response_reg 1.2e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3310 - K14491 gmx:100817125 680.633