LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja2g3310	ATGGCTGCGCCGTTGCAGAAACGAGTGCACTCCGGCACCAGCTCCGGCGGCTCATATAAGGTTACTTCCGCCCCAGAGTTCCCGGTGGGTCTCAGAGTTCTCGTCGTCGACGATGATACCACCACCTTGAAGATTATTGAGAAAATGTCTATTAGTTGCAATTATCGCGTTACCGCATGCTCTGATGCCACTATTGCTTTGAATCTTCTGCGAGAGAGGAAAGATGATTTTGATGTGGTACTGAGTGATGTTCACATGCCAGACATGGATGGATATAAACTTCTTGAACATGTTGGGTTGGAGATGGATCTTCCTGTTATTATGATGTCTGTTGATGGTAGAACATGTGCTGTCATGAAGGGAATTAGACATGGGGCTTGTGATTATTTAATTAAGCCAGTACGTCTGGAAGAACTGAGGAATATATGGCAGCATGTCGTTAGGAAAATATACAATGAAAATAAAGAACATGCAAATTCTGGTGATGCTAAACATACTTCTTCTATTGAATTGGAGATTGATGACCCATCATCTAAGAAGCCCCGTGTAGTGTGGTCAGTAGATCTGCATGAAAAGTTTGTCAGTGCTGTGATTCAACTTGGGCTTGACAGGGCTGTGCCAAAGAGAATTCTAGAGTTGATGAATGACCCTGACTTAACAAGGGAAAATGTTGCAAGCCATTTGCAGAAATTTAGAATTTATTTGAGGCGATTAAGTGAAGTGGCACGGCAACAGATTGGAATGCTAAATACAGTTCCTGGGACTATAGAATCCAAGTTGAGTGCATCTGGAAGATTTGACATACAAGCTTTGGCTGCTTCTGGCCATGTTCCTCCTGAAACACTTACAGCCATTCAAGCTGAGTTTTTAGGTCACCCCATAACTAACATAATACCTACGGTGGGCCAGATTACCCTTCTCGAAGCATCAAGACAGGGTCCAATACATTCTAATGTTCATCATGGTTTGGCACATGGTCAGCCTCTTGAAAAATGCCCTTCCAACATTGCCAAGAATTTCCCTCAGCCCATCGTTACTTTTGATGGCACATCTTCAAGATATGTTGCATCGCAATCATCCAATACAATTAATTATGTGGGACCAAATAGTAGCGTTGGAAGGTTGGGCGTTCAGAATAATGACATGCTGGTGAATATATTGCGGCACCAACAACAGCAGCAGCACCCGCAACAGCCCTCACCTCTGATACAGGATCAAAGTCAATCAATCAATGTTCAACCATCTCGTGTGGGTTGCAGTTTTGGCAGGAATGCCATAATTGGTTATGGTTCATTGTCAAAATCAAATAAATCATTGAGTACATCTCAATTTACTAGTGGTGATGCCATAATTGGTTATGGTTCTTGTTCAATAGGCTCCACCCATAGCAATATTCCGCAGCTTCAAAACTCAACTTTCATATTTGGTGCTGCGAAACCAATCCCTGAACTTCTGCCTGTTACTGATAGACAAGTTCCCTATGGTGTTAAATATGGTGCTTCACTTGATCAAGCATGTCCTAGCAGTCTTGGATTTGTTGGCAGAGGTACCTGCATTCCAAGTAGGTTTATGGAAAATGAAATTGAATCTTCTGCAGGTGATTTTAGTCAAATGAAAGTATCCGTAGATAGCAATGGTAACACCATGAAGGAGGAGCCAAATTTTATATGA	1671	0.4225	MAAPLQKRVHSGTSSGGSYKVTSAPEFPVGLRVLVVDDDTTTLKIIEKMSISCNYRVTACSDATIALNLLRERKDDFDVVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSVDGRTCAVMKGIRHGACDYLIKPVRLEELRNIWQHVVRKIYNENKEHANSGDAKHTSSIELEIDDPSSKKPRVVWSVDLHEKFVSAVIQLGLDRAVPKRILELMNDPDLTRENVASHLQKFRIYLRRLSEVARQQIGMLNTVPGTIESKLSASGRFDIQALAASGHVPPETLTAIQAEFLGHPITNIIPTVGQITLLEASRQGPIHSNVHHGLAHGQPLEKCPSNIAKNFPQPIVTFDGTSSRYVASQSSNTINYVGPNSSVGRLGVQNNDMLVNILRHQQQQQHPQQPSPLIQDQSQSINVQPSRVGCSFGRNAIIGYGSLSKSNKSLSTSQFTSGDAIIGYGSCSIGSTHSNIPQLQNSTFIFGAAKPIPELLPVTDRQVPYGVKYGASLDQACPSSLGFVGRGTCIPSRFMENEIESSAGDFSQMKVSVDSNGNTMKEEPNFI*	557

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lja2g3310	556	TIGRFAM	myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class	180	233	IPR006447	GO:0003677
Lja2g3310	556	Gene3D	-	177	239	-	-
Lja2g3310	556	ProSiteProfiles	Response regulatory domain profile.	32	147	IPR001789	GO:0000160
Lja2g3310	556	SUPERFAMILY	Homeodomain-like	178	237	IPR009057	-
Lja2g3310	556	PANTHER	TWO-COMPONENT RESPONSE REGULATOR	27	421	IPR045279	GO:0009736
Lja2g3310	556	Gene3D	-	31	167	-	-
Lja2g3310	556	CDD	REC_typeB_ARR-like	33	147	-	-
Lja2g3310	556	Pfam	Response regulator receiver domain	33	142	IPR001789	GO:0000160
Lja2g3310	556	PANTHER	TWO-COMPONENT RESPONSE REGULATOR ARR14	27	421	-	-
Lja2g3310	556	SMART	REC_2	31	143	IPR001789	GO:0000160

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja2g3310	Lja-Chr2	74878896	74882660	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja2g3310	26	251	Response Regulator Gene Family	AT2G25180	54.118	3.72e-84	271

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GARP-ARR-B	Lja2g3310		Response_reg	1.2e-20	CL0304

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja2g3310	-		K14491	gmx:100817125	680.633

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