Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3309 ATGTCTATTAGTTGCAATTATCGCGTTACCGCATGCTCTGATGCCACTATTGCTTTGAATCTTCTGCGAGAAAGGAAAGATGATTTTGATGTGGTACTGAGTGATGTTCACATGCCAGACATGGATGGATATAAACTTCTTGAACATGTTGGGTTGGAGATGGATCTTCCTGTTATTATGATGTCTGTTGATGGTAGAACATGTGCTGTCATGAAGGGAATTAGACATGGGGCTTGTGATTATTTAATTAAGCCAGTACGTCTGGAAGAACTGAGGAATATATGGCAGCATGTCGTTAGGAAAATATACAATGAAAATAAAGAACATGCAAATTCTGGTGATGCTAAACATACTTCTTCTATTGAATTGGAGATTGATGACCCATCATCTAAGAAGCCCCGTGTAGTGTGGTCAGTAGATCTGCATGAAAAGTTTGTCAGTGCTATGAATGACCCTGACTTAACAAGGGAAAATGTTGCAAGCCATTTGCAGAAATTTAGAATTTATTTGAGGCGATTAAGTGAAGTGGCACAGCAACAGATTGGAATGCTAAATACAGTTCCTGGGACTATAGAATCCAAGTTGAGTGCATCTGGAAGATTTGACATACAAGCTTTGGCTGCTTTTGGCCATGTTCCTCCTGAAACACTTACAGCCATTCAAGCTGAGTTTTTAGGTCACCCCATAACTAACATAATACCTACGGTGGGCCAGATTACCCTTCTCGAAGCATCAAGACAGGGTCCAATACATTCTAATGTTCATCATGGTTTGGCACATGGTCAGCCTCTTGAAAAATGCCCTTCCAACATTGCGAAGAATTTCCCTCAGCCCATCGTTACTTTTGATGGCACATCTTCAAGATATGTTGCATCGCAATCATCCAATACAATTAATTATGTGGGACCAAATAGTAGCGTTGGAAGGTTGGGCGTTCAGAATAATGACATGCTGGTGAATATATTGCGGCACCAACAACAGCAGCAGCACCCGCAACAGCCCTCACCTCTGATACAGGATCAAAGTCAATCAATCAATGTTCAACCATCTCGTGTGGTAGTGGTGAATAATCTTGCTACTGTCAACCAGGGTTGCAGTTTTGGCAGGAATGCCATAATTGGTTATGGTTCATTGTCAAAATCAAATAAATCATTGAGTACATCTCAATTTACTAGTGGTGATGCCATAACTGGTTATGGTTCTTGTTCAATAGGCTCCACCCATAGCAATATTCCGCAGCTTCAAAACTCAACTTTCACATTTGGTGCTGCGAAACCAATCCCTGAACTTCTGCCTGTTACTGATAGACAAGTTCCCTATGGTGTTAAATATGGTGCTTCACTTGATCAAGCATGTCCTAGCAGTCTTGGATTTGTTGGCAGAGGTACCTGCATTCCAAGTAGGTTTATGGAAAATGAAATTGAATCTTCTGCAAGTGATTTTAGTCAAATGAAAGTATCTGTAGATAGCAATGGTAACACCATGAAGGAGGAGCCAAATTTTATATGA 1509 0.4062 MSISCNYRVTACSDATIALNLLRERKDDFDVVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSVDGRTCAVMKGIRHGACDYLIKPVRLEELRNIWQHVVRKIYNENKEHANSGDAKHTSSIELEIDDPSSKKPRVVWSVDLHEKFVSAMNDPDLTRENVASHLQKFRIYLRRLSEVAQQQIGMLNTVPGTIESKLSASGRFDIQALAAFGHVPPETLTAIQAEFLGHPITNIIPTVGQITLLEASRQGPIHSNVHHGLAHGQPLEKCPSNIAKNFPQPIVTFDGTSSRYVASQSSNTINYVGPNSSVGRLGVQNNDMLVNILRHQQQQQHPQQPSPLIQDQSQSINVQPSRVVVVNNLATVNQGCSFGRNAIIGYGSLSKSNKSLSTSQFTSGDAITGYGSCSIGSTHSNIPQLQNSTFTFGAAKPIPELLPVTDRQVPYGVKYGASLDQACPSSLGFVGRGTCIPSRFMENEIESSASDFSQMKVSVDSNGNTMKEEPNFI* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3309 502 CDD REC_typeB_ARR-like 1 99 - -
Lja2g3309 502 Gene3D - 2 119 - -
Lja2g3309 502 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 1 357 - -
Lja2g3309 502 SUPERFAMILY CheY-like 5 109 IPR011006 -
Lja2g3309 502 Pfam Response regulator receiver domain 7 94 IPR001789 GO:0000160
Lja2g3309 502 SMART REC_2 1 95 IPR001789 GO:0000160
Lja2g3309 502 MobiDBLite consensus disorder prediction 324 343 - -
Lja2g3309 502 Gene3D - 147 174 - -
Lja2g3309 502 SUPERFAMILY Homeodomain-like 130 172 IPR009057 -
Lja2g3309 502 ProSiteProfiles Response regulatory domain profile. 1 99 IPR001789 GO:0000160
Lja2g3309 502 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 357 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3309 Lja-Chr2 74830635 74834220 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3309 17 228 Response Regulator Gene Family AT3G16857 45.230 6.35e-65 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja2g3309 Response_reg 5.4e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3309 - K14491 gmx:100817125 623.239