Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3305 ATGGCTGCGCCGTTGCAGAAACGAGTGCACTCCGGCACCAGCTCCGGCGGCTCATATGAGGTTACTTCCGCCCCAGAGTTCCCGGTGGGTCTCCGAGTTCTCGTCGTCGACGATGATACCACCACCTTGAAGATTATTGAGAAAATGTCTATTAGTTGCAATTATCGCGTTACCGCATGCTCTGATGCCACTGTTGCTTTGAATCTTCTGCGAGAGAGGAAAGATGATTTTGATGTGGTACTGAGTGATGTTCACATGCCAGACATGGATGGATATAAACTTCTTGAACATGTTGGGTTGGAGATGGATCTTCCTGTTATTATGATGTCTGTTGATGGTAGAACATGTGCTGTCATGAAGGGAATTAGACATGGGGCTTGTGATTATTTAATTAAGCCAGTACGTCTGGAAGAACTGAGGAATATATGGCAGCATGTCGTTAGGAAAATATACAATGAAAATAAAGAACATGCAAATTCTGGTGATGCTAAACATACTTCTTCAATTGAATTGGAGATTGATGACCCATCATCTAAGAAGCCCCGTGTAGTGTGGTCAGTAGATCTGCATGAAAAGTTTGTCAGTGCTGTGATTCAACTTGGGCTTGACAGGGCTGTGCCAAAGAGAATTCTAGAGTTGATGAATGACCCTGACTTAACAAGGGAAAATGTTGCAAGCCATTTGCAGCGAACCGGGTGCGCCGGAGCAGATGTCAGGGGATTGACGGGGGTTTTGTTTCCGGTGGAGGAGGTTAAACCCGATTCGCAAACGGGTCAACCCGCTAAAGTGGTGGTTAAGCATAGAAGAGGTATGTTGTTTTTTCTCTACCTGTGGTTTTTAGTGGACTTTGTTTCGATCTCTTGGCTTGTTTAA 873 0.4502 MAAPLQKRVHSGTSSGGSYEVTSAPEFPVGLRVLVVDDDTTTLKIIEKMSISCNYRVTACSDATVALNLLRERKDDFDVVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSVDGRTCAVMKGIRHGACDYLIKPVRLEELRNIWQHVVRKIYNENKEHANSGDAKHTSSIELEIDDPSSKKPRVVWSVDLHEKFVSAVIQLGLDRAVPKRILELMNDPDLTRENVASHLQRTGCAGADVRGLTGVLFPVEEVKPDSQTGQPAKVVVKHRRGMLFFLYLWFLVDFVSISWLV* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3305 290 Pfam Response regulator receiver domain 33 142 IPR001789 GO:0000160
Lja2g3305 290 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 26 231 - -
Lja2g3305 290 Gene3D - 177 233 - -
Lja2g3305 290 SMART REC_2 31 143 IPR001789 GO:0000160
Lja2g3305 290 CDD REC_typeB_ARR-like 33 147 - -
Lja2g3305 290 SUPERFAMILY Homeodomain-like 178 230 IPR009057 -
Lja2g3305 290 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 231 IPR045279 GO:0009736
Lja2g3305 290 Gene3D - 31 167 - -
Lja2g3305 290 ProSiteProfiles Response regulatory domain profile. 32 147 IPR001789 GO:0000160
Lja2g3305 290 SUPERFAMILY CheY-like 30 158 IPR011006 -
Lja2g3305 290 Pfam Myb-like DNA-binding domain 182 230 IPR001005 -
Lja2g3305 290 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 180 230 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3305 Lja-Chr2 74782849 74785670 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3305 11 217 Response Regulator Gene Family AT4G16110 53.659 7.41e-77 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lja2g3305 Response_reg 3.4e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3305 - K14491 vra:106777889 323.553