Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3298 ATGGCGGAACGCGGTGGAGGCGAACGCGGCGGAGGCGATCGCGGTGGCTTCGGACGAGGCTTCGGTGGCCGAGGACGCGGCGGTGACAGGGGCCGCGGAGGCCGTAGAAGAGGCGCAGGCCGCCGCGATGAGGAGGAGAAGTGGGTTCCAGTGACGAAACTCGGTCGTCTAGTGAGGGATGGGAAAATCCGCAGCTTGGAGCAGATCTACCTTCACTCTCTCCCCATCAAGGAGCACCAGATCATCGACACCCTCGTGGGACCCACGCTCAAGGACGAGGTGATGAAGATCATGCCGGTCCAGAAGCAAACCCGGGCCGGTCAGCGAACCCGGTTCAAGGCTTTCGTCGTCGTCGGAGACAACAACGGCCACGTCGGTCTCGGCGTGAAGTGCAGCAAGGAAGTCGCCACCGCCATCCGCGGCGGCATCATACTGGCGAAGCTTTCCGTGATCCCCGTCAGGAGGGGGTACTGGGGGAACAAGATTGGGAAGCCTCACACTGTTCCGTGCAAGGTGACAGGGAAGTGCGGTTCTGTCACCGTCAGAATGGTTCCGGCACCTCGTGGTTCTGGAATTGTGGCTGCTAGGGTTCCCAAGAAGGTGCTGCAGTTCGCTGGGATTGATGATGTCTTCACTTCTTCCCGAGGATCCACCAAGACACTCGGCAATTTCGTTAAGGCAACTTTTGACTGTTTGCTGAAAACCTATGGTTTCCTGACACCTGAATTCTGGAAGGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACACAGATCTGTTGGCTAAGCCAACTGCAAAGGCTCTAATCTTGGAGGAGGAAAGGGTGGATGCTTGA 837 0.5795 MAERGGGERGGGDRGGFGRGFGGRGRGGDRGRGGRRRGAGRRDEEEKWVPVTKLGRLVRDGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGGIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKETRFTKSPFQEYTDLLAKPTAKALILEEERVDA* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3298 278 ProSitePatterns Ribosomal protein S5 signature. 107 139 IPR018192 -
Lja2g3298 278 ProSiteProfiles S5 double stranded RNA-binding domain profile. 90 153 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lja2g3298 278 SUPERFAMILY dsRNA-binding domain-like 86 155 - -
Lja2g3298 278 Gene3D - 153 246 IPR014721 -
Lja2g3298 278 PANTHER 40S RIBOSOMAL PROTEIN S2-1-RELATED 8 276 - -
Lja2g3298 278 MobiDBLite consensus disorder prediction 1 46 - -
Lja2g3298 278 TIGRFAM uS5_euk_arch: ribosomal protein uS5 43 250 IPR005711 GO:0003735|GO:0006412|GO:0015935
Lja2g3298 278 PANTHER RIBOSOMAL S SUBUNIT 8 276 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lja2g3298 278 MobiDBLite consensus disorder prediction 25 46 - -
Lja2g3298 278 Gene3D - 47 152 - -
Lja2g3298 278 Pfam Ribosomal protein S5, N-terminal domain 90 154 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lja2g3298 278 Pfam Ribosomal protein S5, C-terminal domain 174 246 IPR005324 GO:0003735|GO:0005840|GO:0006412
Lja2g3298 278 SUPERFAMILY Ribosomal protein S5 domain 2-like 166 246 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3298 Lja-Chr2 74452863 74454960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3298 44 264 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 90.498 9.48e-151 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3298 K02981 - gmx:100797105 474.167