Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3288 ATGGAAGACTCCAGCAAAGAATTACAAATTTCCAGTTGGTGTTCACTTGAAGAAGGGTTTTCATCTAATGGTGAAGGCAAAACCAGTGCTGTTGCTGGGATTGTTTCCTCACCAACACTGAACCCGTCGGAGTCAATTGCTGAGGATATAAATGGTGAAGGTGTTGGTGTTGATAGTATGGACGATATTGCTAATACTTTGTGGGATGGTATTGATGACATTGAGATGAAGAAGTTTCATTTTCCCAATCGCCAGGTAGCATATGAGTTCTATAACTTGTATGCTAGAGTGAAAGGCTTCTCAGTGCGGAAAAGCAAGGTTTTCAGAATCAAGAAAGGTGAAATTGTGCGGCAAGACTTTGTGTGTCACAAGGAGGGTTTCCGTGAAGAGAAAAACAGAATGAGGGAAAATCGTCAGCGTGAAACTAAGGTTGAGACCAGGTGTGGATGTTGTGCAAAAATGAGAATTCGTTTGGTGGGTGATAGTGGTAGGTGGCATGTGGCATTATTTACAGATTGTCACAATCATGCAATGTTAGAGGGAAAGCAGTCAGCCATGTTACCGGCACATCGTAAGTTAAAAGAAGGGGATATATTGGGATTGAATAGCATGCGGAAAGCTGGGATTAGTACGACACAGATATACAATTTTTTTGCTGACCAATCAGGGGGTTTTGACAAAACCAATTTTCTCAAGGTTGACATGAAAAATCAAATGACCAAACAGAAACAAAAGGAGCATTGTGATGCAAAAGCTGTTTTGGTGTATCTGAAGGGGCTTGGTTCAGGTGATCCCGAAATGTTTTGGTCCCACCATGCTGATGAAGAAGGCAAGTTGAAACAACTGTTTTGGGCTGATGGTATTAGTCGAATGGATTTTCAAGTGTTTGGGGAAGTCCTAGCCTTTGATGCAACATACCGGAAGAATAAATATGGTTGCCCCATTGTTGTTCTTGTCGGAGTTAACCATCATTGCCAGACTATTGTGTTCGGAACAGCAATTTTGACAAATGAAAAAGAGGAAAGCTATGTGTGGGTTCTTGAGCAATTTATGGCAGCAATGAAGGGTAAGGAACCAAGTGCAGTGATAACTGACGGTGCTCCTGCAATGCGGAATGCTATTACTAGAATTTTACCTAGAGCTCATCATCGTTTGTGTGCTTGGCACCTTTTACAAAATGCACAAAGAAATGTGGGTGACCCGAATTTTGTGAAAGGATTTAAGAGCTGCATGTTGGGGAATCTAAGTGTTGGGCACTTCAAAAAAAAATGGGCCCAATTGGTTAGCGATCTGAACCTCGAGGACAATCCATGGGTTCAAGGGTTGTACGAGAAGAGGCACATGTGGGCTACATGTTTGATGAGGGGAAAGTTCTTTGCCGGTTTTCGAACAACATCTCGCTGCGAAGGTATGCATTCACAAATTGGTCGCATTGTTCGATCCCGAAATAGCCTTCTTGAGTTTGTTCAGTATTTTGAGCGGTATGTGAATTACATGCGATGGACTGAGGTTGATGCGGACTACAAGTCAGTCGTAGGAGATGCTGTGCCTAAGACTAATGTGAGAGCACTTGAAAAATGTGCTGCAAATGTATATACAAGGACTGTTTTCCTAAAGTTCAGGCCATGGCTGAACAGTGGTAGTGTAATTAAAGTTGCTGCCATTAAGGAAAAATCCTCATGTATGATCTATTCCATGTACAAGTATTGTAAACCCGATAAGTTGTGGCATGTCGCACATGATGTACAATTGTCTACGTTTAGATGTTCATGTCAGCGGATGGAGACATTTGGGCTTCCTTGTGATCATATCATTGGTTTGTTGGTTCACTTGGACATTGATGTGATCCCTGAGAGTTTAATATTACAGAGGTGGTGTAAGTCAGCAAAGGATTGTATGAAAGATAATAGTGAATCCTCCTACAAATTCTGGGAATCAACAATTCTGGCTAGGCTTGGTTCTCTAGTGATGAGAAGTAGAGAAATGTTTAACCTTGGGTGTGAATCTATGGAAGACTACTTGGACACTGTTGATGTAATGGCAAAGCATGTTATGAAACTTAAGGCAAAAAAGGAGGCAGCCCTTGGAACTGGTGTTGAGAACCTTGATGAAGATGTTGATAATGTAAAAAATCCTCCTGTCATAATGAGCAAGGGATGGGGTGGAACCTCAAATGTGAATGGAAGCAAGGGGAAAAGGAAGTGCACAGTTTGTAAGGTTGAAGGCCATAACAAGACAACATGCCCCCAGAACAAACGAGCCAAAGTTAGTAATGAAGCAGCTGTAGCTTCTAATGCCTCCTTTTTTTGA 2310 0.4182 MEDSSKELQISSWCSLEEGFSSNGEGKTSAVAGIVSSPTLNPSESIAEDINGEGVGVDSMDDIANTLWDGIDDIEMKKFHFPNRQVAYEFYNLYARVKGFSVRKSKVFRIKKGEIVRQDFVCHKEGFREEKNRMRENRQRETKVETRCGCCAKMRIRLVGDSGRWHVALFTDCHNHAMLEGKQSAMLPAHRKLKEGDILGLNSMRKAGISTTQIYNFFADQSGGFDKTNFLKVDMKNQMTKQKQKEHCDAKAVLVYLKGLGSGDPEMFWSHHADEEGKLKQLFWADGISRMDFQVFGEVLAFDATYRKNKYGCPIVVLVGVNHHCQTIVFGTAILTNEKEESYVWVLEQFMAAMKGKEPSAVITDGAPAMRNAITRILPRAHHRLCAWHLLQNAQRNVGDPNFVKGFKSCMLGNLSVGHFKKKWAQLVSDLNLEDNPWVQGLYEKRHMWATCLMRGKFFAGFRTTSRCEGMHSQIGRIVRSRNSLLEFVQYFERYVNYMRWTEVDADYKSVVGDAVPKTNVRALEKCAANVYTRTVFLKFRPWLNSGSVIKVAAIKEKSSCMIYSMYKYCKPDKLWHVAHDVQLSTFRCSCQRMETFGLPCDHIIGLLVHLDIDVIPESLILQRWCKSAKDCMKDNSESSYKFWESTILARLGSLVMRSREMFNLGCESMEDYLDTVDVMAKHVMKLKAKKEAALGTGVENLDEDVDNVKNPPVIMSKGWGGTSNVNGSKGKRKCTVCKVEGHNKTTCPQNKRAKVSNEAAVASNASFF* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3288 769 SUPERFAMILY Retrovirus zinc finger-like domains 719 754 IPR036875 GO:0003676|GO:0008270
Lja2g3288 769 ProSiteProfiles Zinc finger SWIM-type profile. 580 612 IPR007527 GO:0008270
Lja2g3288 769 SMART 26again6 587 614 IPR006564 GO:0008270
Lja2g3288 769 Pfam MULE transposase domain 299 393 IPR018289 -
Lja2g3288 769 PANTHER OS02G0262500 PROTEIN 76 677 - -
Lja2g3288 769 Pfam FAR1 DNA-binding domain 89 179 IPR004330 -
Lja2g3288 769 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 76 677 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3288 Lja-Chr2 73762113 73764511 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja2g3288 MULE 5.6e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3288 - - ahf:112720852 623.624