Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3277 ATGGCAGATTATTCCCAAAACTCAAAATGGAAGTATCATGTTTTCTTGAGTTTTAGGGGAGTTGACACCCGCTTAGCGTTCACCGATCACTTATATGCAGCTTTGGTACGCAAAAGCATAATAACTTTCAGAGATGATGAAGAATTACCCAGGGGTGAAGTCATCTCAGAAAAACTTGGGCACGCAATTGAGCAGTCTCTTTCAGCAATTGTCATAATCTCCAAAAACTATGCTTCTTCAGCTTGGTGTTTGGATGAGTTACTCAAGATTCTTCAGTCCAAACATTTGTTGGGACAACAAGTATTTCCAATCTTCTATGGTGTGCATCCCTCTGATGTACGGAACCAGAGAGGAAGTATTGCAGAAGCTTTTTGGAAACATGAAGAAAAATATAATGAAAACAAAGAGAAGGTGCAAAACTGGAGAGATGCATTAAGAGAAGTTGCCAACTTGTCAGGGTGGGAATCTAAGGATCAACATGAAACAGAACTCATTGAAGAAGTTGTTTCACAGGTGTGGAAAAAACTAGAACTCAAATTCCCAGCATATAATGATGGACTGGTTGCAATTGACACAAGATTACAAGATTTATTTTCAACGCTGAAGCTAGGATTGGAGGATGTGCGTTTCATAGGGATATGGGGCATGGGTGGTATAGGTAAAACAACTCTTGCCACAGCTCTCTTCAAGAAAATTAGAAGCCATTTTGATGTTAGTTGCTTTATTGCCAATGTTAGAGAGGCCTCTGGGGAAAGAAACCAAGGTCTGCTACAGTTACAAAATAAAATTCTTTCTAAACTAGACATAAAAGGAATGGTAATCGATACTTTAAGCGAAGGAAAGGACAGCTTGAGAAACCTCTTATCCAACAAAAAAGTTCTACTTGTTCTTGATGATGTAAGTTCTAAAATCCACCTTGAGAATTTGGCTGGAAACCAAGAATGGTTTGGTCAAGGGAGTAGAATTATCGTCACAACTAGGGATAAGCACCTGCTAATATCACATGTAGTGTTGTTTGAAATGTATGAGAGTAAAATCTTAAATAGAAGTGAATCCCTTCAACTTTTTTGTGAGAAGGCATTTAAAGAAAACAAACCTAAAGAGGATTATTTGAAGTTGTCTCAAAGTGTAGTTGAATATGCTGGAGGCCTTCCCTTGGCTCTTGAAGTGTTGGGTTCTTTTCTTTGTGGAAGAAGTTTATGTGATTGGAAAGATGCATTGATCAAGATTAAGAAAGTTCCACATGATGATATCCTGGACAAACTAAGAATAAGTTATGACATGTTAGAAGATGAGCACAAGACCATATTCCTTGATATTGCCTGTTTTTTTAAGGGATGGTACAAACATAAAGTGATACAAATATTGGAAAGTTGTGGCCTTCATCCAACAGTTGGAATAAATGTTCTTATTGAAAAATCACTATTAACTTTCGATGGAAGAGTTATTGGAATGCATGACATGCTTGAAGAAATGGGTAAAACCATAGTTTTTCAAGAATCTCCTAATGATCCTGGTAGGCGGACTAGATTATGGTCACTAGATGATATTGATCAAGTGCTGAGAAAAAATAAGGGAACTGAAATTGTCCAAGGTATAGTTTTGAACTCATCACCATCTAAGCCATACAAAGCACATTGGGACCCTGAGGCCTTCTCAAGGATGTGCAATATGAGATTTCTCATTGTATTATGTGACATGCATCTTCCTCTTGGTCTGAAATGTCTTCCTAGCTCACTGAAAGTTCTTGTATGGTGGGCATATCCGTTGAATGCTCTACCACTTGAAGTTCAGCTAGATGAGCTTGTGCACATGCAAATGATCAATAGTAAAATTAGACAACTATGGAATGGAACTCAGTGTTTTGGAAAGCTGAAAGTAATTGATTTGAGTAATTCCAAGTATCTACGTCAAACTCCGAATATCTCAGGAGTTCCGTGTCTTGAAGAGTTGTATCTTAATGATTGTACAACACTTGTTGAAGTTCACCAATCTATTGGACAACACAAAAAGCTCATGATATTGCATATGATGGGATGTATAAATCTCAAAACCTTTCCAAACAAATTGGAAATGTGTTCACTGAAAACTTTCTATCTTTCTAATTGCCTAACAGTTCAAAGACTTCCTGATTTTGGGGAAAACATGACATCAGTTTCAGTGCTTAATTTAATGAATTGCAAAAATCTTTTAGGCCTTCCGAACAGCATTAGTAACCTGAAGTCTCTCAGAGTTCTCAATATATCTGGATGCTCAAAGGTTTTACACCTGCCAGATAATTTAAATCAGAACAAGGCTCTGGAGGATCTTGACTTGAGTAGAACTGCTATTACAAAATTAGATCCATTCCTACTTCAGTTAGGGAATCTCAAAAGGTTATCTTGCAGTGAGTGTTGTTGGTCATTAGCCAACCCCATCAGGTCCACAGCCTTAACACTGCCTCCTTCTATGTCAGGTTTTTCTGCATTAACTACTTTGGATTTAAGTTATTGCAATCTCACTGATTATTCAATTCCTCCTGATATCGATTGCCTATCATCATTGGAGAGACTAATCCTAAGTGGGAACAATTTTACACGCCTGCCTCACAACATTGCTAATCTTCCAAAGCTTTGTCTTCTTGAATTGGAAAATTGCCCACAGCTTCAGTCCTTACCGGTGCTTCCACCAAATAAACGCTTATATGTAGATTCAGATACAGTGGAGGTTAATTTGTTGGATCAAGAAAAGATATGGAAGTTGTTTAAATTAAGTGACCAAGTGCTCTCGCAGTCACCTGTATCTCAAATGCTTTATTGTCACCCCCGCACTCCTGTGTACATTAAAATCCCACCGCGATCTGATGCTGAGAATTTTTTTCCCGTGGACTCATCATTTGTGTCAAAACTTGATTCATTTGCATCAGTGACAGTTGGCATCCCAGAAGATTGTTATTCAAGTGATTGGTGGGGAGTTGCTGTTTTGGTGGCGTTAGATGCTGAAACTCCAGATGAAGATTCTATGGCCAAATACATGCACTTGTATTGGAGCTTTGACACTATGGATCCTGAAGATGGACCCTCGCTATCTCTGGCCTCAAGTTCAGAAGCAAATAATGACCTGTACCTGTTCACAATGGTAGTGAGTGATCACTTTATATACATTAGAGAACACCTAAGGACAGATCCAAAGTGGGCTCGGAAGTTCTTCAGCAAGCATCGAAAGCCAGAGTTGAAGGAAAAGAGTTTGGTGCGTTTTGAAGTGGATGTCGGAGGGTGCAAGATAAGCAAGTGTGGGTGGCGCGTGTTGCGTAAGGAAGATTGTCTTGAAGACTTTGAAAAATTCTACAGCGGCCAACATGGTAGGACGGGTGAATTCAAGGGAAAGGATGTTACTTCTCTGGAGGAGCAAACCACTGAAAGATCCAATGATAACAACTCGATGGTAAGCAGCGGCCAATATGTTGAGACTTGTTCTGATTCTGAGCATTCCGGTGGTCTGAGCAAACCAACTACGGATGAATTCAAGGGAGAGGATGTTACTGCTTCCGATAAGCGTAACATTGAAAGATCCAATCTTACATTGAAAGGGAAATTGTTTCAGAGTATTAGACAAGGACTTGGTTTAAGCATTTTAGCTTTGATGGCAACGATGGTAGGGACTACAGTATTCCTTTTGCCTAGGCAGGGTTTGGGATTTAAACAGCACATCGCAACAAATGAGGACACTGCTAAACTATCAAAATCACATTTGATTTCCCATGGAACTGCACTTCAGGTCAATACACCACAATTGCGGCAAAATCATAAAAAAAATTCAAGCACACGATTTTCTCTTTCAGTACTGCATCCACCAAGAACACTAGGTTTTTCTCAGAATCACTATCCTTACTTTACTAGACGAGGGGCATTATGCCCTTTATAG 3903 0.3912 MADYSQNSKWKYHVFLSFRGVDTRLAFTDHLYAALVRKSIITFRDDEELPRGEVISEKLGHAIEQSLSAIVIISKNYASSAWCLDELLKILQSKHLLGQQVFPIFYGVHPSDVRNQRGSIAEAFWKHEEKYNENKEKVQNWRDALREVANLSGWESKDQHETELIEEVVSQVWKKLELKFPAYNDGLVAIDTRLQDLFSTLKLGLEDVRFIGIWGMGGIGKTTLATALFKKIRSHFDVSCFIANVREASGERNQGLLQLQNKILSKLDIKGMVIDTLSEGKDSLRNLLSNKKVLLVLDDVSSKIHLENLAGNQEWFGQGSRIIVTTRDKHLLISHVVLFEMYESKILNRSESLQLFCEKAFKENKPKEDYLKLSQSVVEYAGGLPLALEVLGSFLCGRSLCDWKDALIKIKKVPHDDILDKLRISYDMLEDEHKTIFLDIACFFKGWYKHKVIQILESCGLHPTVGINVLIEKSLLTFDGRVIGMHDMLEEMGKTIVFQESPNDPGRRTRLWSLDDIDQVLRKNKGTEIVQGIVLNSSPSKPYKAHWDPEAFSRMCNMRFLIVLCDMHLPLGLKCLPSSLKVLVWWAYPLNALPLEVQLDELVHMQMINSKIRQLWNGTQCFGKLKVIDLSNSKYLRQTPNISGVPCLEELYLNDCTTLVEVHQSIGQHKKLMILHMMGCINLKTFPNKLEMCSLKTFYLSNCLTVQRLPDFGENMTSVSVLNLMNCKNLLGLPNSISNLKSLRVLNISGCSKVLHLPDNLNQNKALEDLDLSRTAITKLDPFLLQLGNLKRLSCSECCWSLANPIRSTALTLPPSMSGFSALTTLDLSYCNLTDYSIPPDIDCLSSLERLILSGNNFTRLPHNIANLPKLCLLELENCPQLQSLPVLPPNKRLYVDSDTVEVNLLDQEKIWKLFKLSDQVLSQSPVSQMLYCHPRTPVYIKIPPRSDAENFFPVDSSFVSKLDSFASVTVGIPEDCYSSDWWGVAVLVALDAETPDEDSMAKYMHLYWSFDTMDPEDGPSLSLASSSEANNDLYLFTMVVSDHFIYIREHLRTDPKWARKFFSKHRKPELKEKSLVRFEVDVGGCKISKCGWRVLRKEDCLEDFEKFYSGQHGRTGEFKGKDVTSLEEQTTERSNDNNSMVSSGQYVETCSDSEHSGGLSKPTTDEFKGEDVTASDKRNIERSNLTLKGKLFQSIRQGLGLSILALMATMVGTTVFLLPRQGLGFKQHIATNEDTAKLSKSHLISHGTALQVNTPQLRQNHKKNSSTRFSLSVLHPPRTLGFSQNHYPYFTRRGALCPL* 1301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3277 1300 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 7 625 - -
Lja2g3277 1300 Gene3D Ribonuclease Inhibitor 807 888 IPR032675 -
Lja2g3277 1300 Gene3D Ribonuclease Inhibitor 710 806 IPR032675 -
Lja2g3277 1300 ProSiteProfiles Leucine-rich repeat profile. 847 869 IPR001611 GO:0005515
Lja2g3277 1300 ProSiteProfiles TIR domain profile. 10 176 IPR000157 GO:0007165
Lja2g3277 1300 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 154 IPR035897 -
Lja2g3277 1300 SMART till_3 11 151 IPR000157 GO:0007165
Lja2g3277 1300 Gene3D - 5 175 IPR035897 -
Lja2g3277 1300 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 625 IPR044974 GO:0006952
Lja2g3277 1300 SUPERFAMILY L domain-like 552 932 - -
Lja2g3277 1300 PRINTS Disease resistance protein signature 738 754 - -
Lja2g3277 1300 PRINTS Disease resistance protein signature 210 225 - -
Lja2g3277 1300 PRINTS Disease resistance protein signature 287 301 - -
Lja2g3277 1300 PRINTS Disease resistance protein signature 381 395 - -
Lja2g3277 1300 SMART AAA_5 207 347 IPR003593 -
Lja2g3277 1300 Gene3D - 346 430 IPR042197 -
Lja2g3277 1300 Gene3D - 176 337 IPR027417 -
Lja2g3277 1300 SUPERFAMILY "Winged helix" DNA-binding domain 417 521 IPR036390 -
Lja2g3277 1300 MobiDBLite consensus disorder prediction 1160 1176 - -
Lja2g3277 1300 MobiDBLite consensus disorder prediction 1151 1176 - -
Lja2g3277 1300 Pfam TIR domain 11 182 IPR000157 GO:0007165
Lja2g3277 1300 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 809 886 - -
Lja2g3277 1300 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 690 780 - -
Lja2g3277 1300 Gene3D Ribonuclease Inhibitor 520 709 IPR032675 -
Lja2g3277 1300 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 440 IPR027417 -
Lja2g3277 1300 Pfam NB-ARC domain 206 411 IPR002182 GO:0043531
Lja2g3277 1300 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 809 886 IPR044974 GO:0006952
Lja2g3277 1300 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 690 780 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3277 Lja-Chr2 73308129 73314914 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3277 7 793 WRKY Transcription Factor Family AT4G12020 30.889 1.18e-93 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3277 - - mtr:MTR_3g080470 1719.13