LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja2g3274	ATGTCTTTTCCACGGTGTTGCTTTATATGTATTTTTATTCTTTTGGGTTTAGGTATAGAGCTAGCAAATTCTCAGCCTTATAGAGTAGTGGGAGGAAAACTACTACCTTACAAGACAATCATCGTGGATCAATCAGGGCATGGAAACTTCAAAACCATACAATCTGCTATTGATTCAATCCCTTCCAACAATAGGTATTGGGTTTCCATAAATGTGAAGACAGGTATCTACAGGGAAAAAGTGATCACAATTCCAGTTGACAAGCCTTACATCCTATTGCAAGGAGAGGGAAAGACGAAAACTCTTGTTCAATGGGGTGACCATGATAACACATTACAGAGCGCTACATTCACAACTTTGGCTGACAATATCATCATCAAGTTTATGAGTTTTATTAATTCTTACAAGAATTATAAACCCGTACGACCAGCAGTAGCTGCCTTGGTAAGCGGTGACAAGTCCTACTTCCCTAGTGTTGGTTTCTTTAGTTTTCAAGATACTTTGTGGGATAATCGTGGAACTCATTACTACAAGTCTTGTACCATTCAAGGTGCTGCTGATTTTATCTTTGGTGATGGTCAATCATTATACGAGGATTGTACCATATCTGTTATTGCTGCACCTCTAGGTCCAGGAATTTCTGGTTTTATCACAGCACAAGGGAGGGTAAGTCCCAGCCAATCAAGTGGATTTGTTTTTAAGAATTGTGTTATCGATGGAACTGGCACAACTTACTTGGGAAGACCGTGGAGAGAATATGCTAGAGTTCTTTTCTACCACACAAAAATGTCGAACATTATACATCCAAATCGTTGGGATCCAGGGCATTTCCGTAATCAAGTGTAA	846	0.3936	MSFPRCCFICIFILLGLGIELANSQPYRVVGGKLLPYKTIIVDQSGHGNFKTIQSAIDSIPSNNRYWVSINVKTGIYREKVITIPVDKPYILLQGEGKTKTLVQWGDHDNTLQSATFTTLADNIIIKFMSFINSYKNYKPVRPAVAALVSGDKSYFPSVGFFSFQDTLWDNRGTHYYKSCTIQGAADFIFGDGQSLYEDCTISVIAAPLGPGISGFITAQGRVSPSQSSGFVFKNCVIDGTGTTYLGRPWREYARVLFYHTKMSNIIHPNRWDPGHFRNQV*	282

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja2g3274	281	PANTHER	PECTINESTERASE 10-RELATED	21	277	-	-
	Lja2g3274	281	Pfam	Pectinesterase	40	273	IPR000070	GO:0030599\|GO:0042545
	Lja2g3274	281	Gene3D	-	36	280	IPR012334	-
	Lja2g3274	281	PANTHER	ACYL-COA THIOESTER HYDROLASE YBHC-RELATED	21	277	-	-
	Lja2g3274	281	SUPERFAMILY	Pectin lyase-like	36	275	IPR011050	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja2g3274	Lja-Chr2	72978784	72998229	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja2g3274	38	280	Carbohydrate Esterase	AT2G19150	48.178	1.62e-71	220

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja2g3274	-		-	gmx:100819252	350.517

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