Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3272 ATGGCAGATTGTACCCAAAACTCAAAATGGAAGTATCATGTTTTCTTGAGTTTTAGGGGAGAAGACACTCGCCTAGGTTTCACCGATCACTTATATGCAGCTTTGGTCCGCAAGAGTATAATAACTTTCAGAGATGATGAAGAACTTGCCAGAGGTGAAGTTATCTCACAAAAACTCCTGCATGCTATTCACAAGTCTCTATCAGCAATTGTCATAATCTCCAAAAACTATGCTTCTTCATCTTGGTGTTTGGATGAATTGGTCAAGATTCTTGAGACCAAAAATTTGTCGGGACAACAAGTGTTTCCGATCTTTTATGGTGTGGATCCCTCCGATGTAAGGAATCAAAGGGGAAGTTTTGCAGAAGCTTTTAGGAAACATGAAGAAAAATCTACTGAAAACAAAGAAAATGTGCAAAAATGGAGAGATGCATTAAGAGAAGTGGCCAACTTGTCAGGGTGGGACTCTAAGGATCAACATGAAACTGAACTAATTGAAGAAGTTGTTGCACAAGTATGGAAAAAATTAGAACTCAAATTCCCAACATATAATGATGGACTGGTTGCAATTGACACAAGACTAGAAGATTTATTTTCAATTTTGAAGCTAGGATTGGAGGGTGTTCGTTTCATAGGGATATGGGGCATGGGTGGTATAGGTAAAACAACTCTTGCTACAGCTCTCTTCAAGAAAATTAAAAGCCATTTTGATGTTAGCTGCTTTATTGCCAATGTTAGAGAGGTGTCTGGGGAAAGAAGTGAGGGTCTGCTGCAGTTGCAAAATAAAATTCTTTCTCATCTAAACATCAAAGGAATGATAATTGAAACTTTAAGCGAAGGAAAGGACAGCTTAAGAAACCTCTTGTCCAGCAAAAGAGTTCTACTTGTCCTTGATGATGTAAGTTCTAAAACACATCTTGAGAATTTGGCTGGAAACCTAGAATGGTTTGGTCAAGGGAGTAGAATTATAGTGACAACAAGGGATAAGCACCTGCTGATATCACACGTAGTGTTGTTTGAAATGTATGAGAATAAAATCTTAAATAAAAGTGAATCCCTTCAACTTTTATGTGAAAAGGCATTTAAAGGAAACCAACCTAAAGAGGATTATTTGAAATTGTCTCAAAGTGTAGTCGAATATGCTGGAGGCCTTCCCTTGGCTCTTGAAGTGTTGGGTTCTTTTCTTTGTGGAAGAAGTTTATCTGATTGGGAAGATGCATTGGTCAAGATGAAGCAAGTTCCACATGATGATATCCTAAACAAAATACGAATAAGTTATGACATGTTAGAAGAGGAACACAAGACCATATTTCTAGACATAGCCTGTTTTTTTAAGGGATGGTACAAACATAAAGTGATACAAGTTTTGGACAATTGCGGTCTTCATCCAACAGTGGGAATAAATGTTCTTATAGAAAAATCATTGGTAACTTTCGATGGAAGAGTTATTGGGATGCATGATCTTCTTGAAGAAATGGGCAAAACTATTGTTTTTCAAGAGTCTCCTAATGATCCTGGTCGGCGGAGTAGATTATGGTCACTAGAGGATATTGACCAAGTGCTAAAAAAGAATAAGGGGACTGAACTTGTCCAAGGTATAGTTTTGAAGTCAACACCTTCTAAGCTGTACGAAGCACATTGGGACCCTGAGGCCTTCTCAAAGATGTGTAATCTTCGATTACTCGTTGTATTATGTGATTTGCATCTTCCTCTTGGTTTGAAATGTCTTTCTAGCTCACTAAAAGTTCTTGTATGGTGGGGATATCCATTGAATGCTCTACCCCTTAAAGCTCAACTAGATGAGCTCGTTCACTTACAAATGATCAATAGTAAGGTTAAACAACTATGGAAGGGAACTCAGTATTTTGGAAAGCTGAAAGTAATTGATTTAAGTAATTCCAAGGATCTACTTCAAACTCCAAATATCTCTGCAGTTCCTTACCTTGAAGAGTTGTACCTTAATGATTGTACAAAACTCTTTGAAGTTCACCAATCTATTGGACAGCACAAAAAGCTCATGATTTTGAGCTTGATGGGATGTGGAAATCTCAAAATCCTTCCAAGTAAATTGGAGATGTGTTCCCTGAAAATGTTCTTCCTTTCTGACTGCTCAGACATTGAAAGACTTCCTGATTTTGGGGAAAACATGACATCCGTTTCAGTGCTTAATTTGATGAAATGCAAAAGTCTTTTGTACCTTCCAGATAGCATTAGTAACCTGAAGTCTCTCAGAATTCTCAACATATCAGGATGCTCACAAGTTTTTTGCTTGCCAGATAATCTAAAACAAAACAAAGCTTTGGAGGATCTTGACTTGAGTAGAACTTCTATTAGAATGTTTGATCCATTCCTACTTCAGTTAGGGAATCTCAAAAGGTTATCTTTCTTGGGGTGCAGTGGACCACCATCCAACTCCAGCTGGGACTTACATCTTCCTTTGGGGCTTAAGTTAAGGTTTTCCCCTGCCCGTACAGGCTTAAAATTGCCTCCTACTGTCTCAGGTCTTTCCTCATTAACTGTTTTGAATTTAAGTTTTTGCAATCTCACTGATGCTTCAATTCCTCCCGATATCGATCGCTTATCATCATTGGAGAGACTAATTTTAAGTTGGAACAATTTTACACACCTACCTGACTCCATTGCTAATCTTCCAAAGCTTCACTGTCTGGAATTGGAAAATTGCCCAGAGCTTCAATCCTTACCTGTGCTTCCACCGCATGTACGCTTGTATGCATCAGATTCAGATGCAATGCCGGGTAATTTATTAGATCCAGAAAAGTTATGGAAGTTGTTTGAATCAAGTGATCAAGAGCTTTTTCTGTCACCTGTATCTCGAAAGCTTGATTGGCCAGCACTCTATCCTGTGTACATGGAAATCCCGCCACGATTGGATACTAAGAGCTTTTTTCCCTTGGGGTCAGCATATATATCAAAACTTGATTCATTTGCATCAGTAACAGTTGGCATCCCTGATGATTGTCTTTCAAGTGATTGGTGGGGAGTTGCTGTGTTGGTTGCCTTAGATGCTCAGTCTCCAGATGAAGGTTTTATGGCCAAACAAATGCGTATGTATTGGAGCTTTGACACTGAAGATGGTCCCTCTCTATCTCTGGCGTCGGGATCAACAGCGAATAATGACCTCTATCTGTTTACATTGGCAGTGAGTGATGACTTTATATACATTCGACGGCACAATAGAGACGACCCGCCGTGGTGGAACCGAGAACACTTTAGCAAGCATCGAAAGCCAGAGCTGAATGAAAACAGTTTGGTGTGTTTTGAAGTGCACGTGGGAGGGTGCAAGATAAGAAAGTGTAGGTGGCGTGTGTTGCGCAAGGAAGATTGTATTGAAGACTTGCAAAACGTAAAGGGCCGTGGCCAACCTGTTAAGACTCGTCCTAGAGGTGAGAGCAAACTATCTATGGATGAATTCAAGGGAGAGGATGTTATTGCTTCGGAAGGATCCAAGGACAACTTCTCCATGGGGAAGTTGTTTCACAATATTAGACAAGGACTTGGTATAAGCATGCTAGCTTTGATGGCAGGGACTGCAATGTTCCTTTTGCCTAGGCAGGGTTTGGGCTCTAAACAGCAAACCCCAACAATTGGGGACACATCTAAACTAATAAAATCTCGTCAAGTTTCCCATGGAACTGGACTTAAGGTCAGCATACCTCAACTGCAACGCAATCATGGCAAAAATGCAAGAAAGCCATTTTTACTTTCACTATACCAGCCACCAAGAACACTGCGTTTATCTCAGAATGTCTTCTACTCTTACCTAACCAGATGA 3792 0.3977 MADCTQNSKWKYHVFLSFRGEDTRLGFTDHLYAALVRKSIITFRDDEELARGEVISQKLLHAIHKSLSAIVIISKNYASSSWCLDELVKILETKNLSGQQVFPIFYGVDPSDVRNQRGSFAEAFRKHEEKSTENKENVQKWRDALREVANLSGWDSKDQHETELIEEVVAQVWKKLELKFPTYNDGLVAIDTRLEDLFSILKLGLEGVRFIGIWGMGGIGKTTLATALFKKIKSHFDVSCFIANVREVSGERSEGLLQLQNKILSHLNIKGMIIETLSEGKDSLRNLLSSKRVLLVLDDVSSKTHLENLAGNLEWFGQGSRIIVTTRDKHLLISHVVLFEMYENKILNKSESLQLLCEKAFKGNQPKEDYLKLSQSVVEYAGGLPLALEVLGSFLCGRSLSDWEDALVKMKQVPHDDILNKIRISYDMLEEEHKTIFLDIACFFKGWYKHKVIQVLDNCGLHPTVGINVLIEKSLVTFDGRVIGMHDLLEEMGKTIVFQESPNDPGRRSRLWSLEDIDQVLKKNKGTELVQGIVLKSTPSKLYEAHWDPEAFSKMCNLRLLVVLCDLHLPLGLKCLSSSLKVLVWWGYPLNALPLKAQLDELVHLQMINSKVKQLWKGTQYFGKLKVIDLSNSKDLLQTPNISAVPYLEELYLNDCTKLFEVHQSIGQHKKLMILSLMGCGNLKILPSKLEMCSLKMFFLSDCSDIERLPDFGENMTSVSVLNLMKCKSLLYLPDSISNLKSLRILNISGCSQVFCLPDNLKQNKALEDLDLSRTSIRMFDPFLLQLGNLKRLSFLGCSGPPSNSSWDLHLPLGLKLRFSPARTGLKLPPTVSGLSSLTVLNLSFCNLTDASIPPDIDRLSSLERLILSWNNFTHLPDSIANLPKLHCLELENCPELQSLPVLPPHVRLYASDSDAMPGNLLDPEKLWKLFESSDQELFLSPVSRKLDWPALYPVYMEIPPRLDTKSFFPLGSAYISKLDSFASVTVGIPDDCLSSDWWGVAVLVALDAQSPDEGFMAKQMRMYWSFDTEDGPSLSLASGSTANNDLYLFTLAVSDDFIYIRRHNRDDPPWWNREHFSKHRKPELNENSLVCFEVHVGGCKIRKCRWRVLRKEDCIEDLQNVKGRGQPVKTRPRGESKLSMDEFKGEDVIASEGSKDNFSMGKLFHNIRQGLGISMLALMAGTAMFLLPRQGLGSKQQTPTIGDTSKLIKSRQVSHGTGLKVSIPQLQRNHGKNARKPFLLSLYQPPRTLRLSQNVFYSYLTR* 1264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3272 1263 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 627 IPR044974 GO:0006952
Lja2g3272 1263 Gene3D - 177 337 IPR027417 -
Lja2g3272 1263 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 7 627 - -
Lja2g3272 1263 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 827 901 - -
Lja2g3272 1263 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 440 IPR027417 -
Lja2g3272 1263 Gene3D - 346 430 IPR042197 -
Lja2g3272 1263 Pfam TIR domain 11 182 IPR000157 GO:0007165
Lja2g3272 1263 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 154 IPR035897 -
Lja2g3272 1263 PRINTS Disease resistance protein signature 210 225 - -
Lja2g3272 1263 PRINTS Disease resistance protein signature 381 395 - -
Lja2g3272 1263 PRINTS Disease resistance protein signature 287 301 - -
Lja2g3272 1263 PRINTS Disease resistance protein signature 738 754 - -
Lja2g3272 1263 Pfam NB-ARC domain 208 412 IPR002182 GO:0043531
Lja2g3272 1263 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 684 783 IPR044974 GO:0006952
Lja2g3272 1263 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 827 901 IPR044974 GO:0006952
Lja2g3272 1263 SMART LRR_typ_2 835 859 IPR003591 -
Lja2g3272 1263 SMART LRR_typ_2 860 883 IPR003591 -
Lja2g3272 1263 ProSiteProfiles TIR domain profile. 10 176 IPR000157 GO:0007165
Lja2g3272 1263 SMART till_3 11 151 IPR000157 GO:0007165
Lja2g3272 1263 Gene3D - 8 176 IPR035897 -
Lja2g3272 1263 SUPERFAMILY "Winged helix" DNA-binding domain 417 522 IPR036390 -
Lja2g3272 1263 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 684 783 - -
Lja2g3272 1263 SUPERFAMILY RNI-like 579 898 - -
Lja2g3272 1263 Gene3D Ribonuclease Inhibitor 709 922 IPR032675 -
Lja2g3272 1263 Gene3D Ribonuclease Inhibitor 540 708 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3272 Lja-Chr2 72804912 72822354 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3272 7 796 WRKY Transcription Factor Family AT4G12020 31.377 8.03e-95 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3272 - - mtr:MTR_3g080470 1769.59