Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3266 ATGGAAGATTGTACCCAAACCTCAAAATGGAAATATCAAGTTTTCTTGAGTTTTAGGGGAGAAGACACTCGCTTAGGTTTCACCGATCACTTATATGCAGCCTTGGTCCGCAAGAGTATAATAACTTTCAGAGATGATGAAGAACTTGACAGAGGTGAAGTCATCTCACAAAAACTCCTGCATGCAATTGAGGAGTCTCTTTCAGCAATTGTCATAATCTCCAAAAACTATGCTTCTTCAACTTGGTGTTTGGATGAGTTACTTAAAATTCTTGAATCCAAACACTTGTTGGGACAACAAGTATTTCCGATCTTCTATGGTGTGGATCCCTCTGATGTACGGAATCAGAGGGGAAGTTTTGCAGAAGCTTTTAAGAAACATGAAGAAAAAGTTACAGAAAACAAAGAGAAGTTGCAAAAGTGGAGAGATGCGTTAAGAGAAGTAGCCAACTTGTCAGGGTGGGACTCTAAGGATCAACATGAAACTGAACTCATTGAAGAAGTTGTTGCACAAGTATGGAAAAAACTAGAACTCAAATTCCCAACATATAATGATGGACTTGTTGCAATTGACACTAGATTAAAAGATTTATATTCAATTTTGAAGCTAGGATCAGAGGATGTTCGTTTCATAGGGATATGGGGCATGGGTGGGATAGGTAAAACAACTCTTGCTACTGCTTTCTTCAAGAAAATCAGAAGCCATTTTGATGTTAGTTGCTTTATTTCCAATGTTAGAGAGGCCTCTGGGGAGAGAGACCAAGGACTGCTACAGTTGCAAAATAAAATTCTTTCTCATCTTAACATAAAAGGTATGGTCATTGAAACTTTAAGCGAAGGAAAGGACAGCTTAAGAAACCTTTTGTCGAACAAAAAAGTTCTACTTGTCCTTGATGATGTATGTTCTAAAACCCAACTTGAGAATTTGGCTGGAAACCAAGAATGGTTTGGTCAAGGGAGTAGAATTATTGTCACAACTAGGGATAAGCACCTGCTGATATCACATGCAGTATTGTTTGAAATGTATGAGAGTAAAATCTTAAATAAAAGTGAATCCTTTCTACTCTTTTGTGAAAAGGCATTCAAAATAAATGAACCTAAAGACGATTATCTGAAGTTGTCTCACAGTGTAGTGGAATATGCTGGAGGTCTTCCCTTGGCCCTTGAGGTGTTGGGTTCTTTTCTTTGTGGAAGAAGTTTATCGGATTGGGAAGATGCATTGATCAAGATTAAGAAAGTTCCACATGATGATATCCTAAACAAACTAAGAATAAGCTATGACATGTTAGAAGATGAGCACAAGACCCTTTTTCTAGATATTGCCTGTTTTTTTAAGGGATGGTACAAACATAAAGTGATACAATTATTGGGCAGTTGCGGCCTTCATCCAACAGTTGGAATAAATGTTCTTATAGAAAAGTCTCTTCTAACTTTTGATGGAAGAGTTATTGGAATGCACGATCTGCTTGAAGAAATGGGTAAAACTGAAGTTTTTCTTGAATCTCCTAATGATCCCGGTAGACGGAGTAGATTGTGGTCTCTAGAAGATATTGATCAAGTGCTGAGAAAGAATAAGGGATCTGAAATTGTTCAAGGTATAGTCTTGAAGTCATCACCGTCTAAGCTTTACGAAGCACATTGGGACCCTGAGGCCTTCTCAAAGATTTATAATCTTAGATTACTTGTTGTATTGTGTGATATGCATCTTCCTCTAGGTCTGAAATGTCTTCCTAGCTCTCTGAAAGTTCTTATATGGTGGGGATATCCATTGAATACTCTACCACTTGAAGTTCAACTAGATGAGCTCGTTCACATACAAATGATCAATAGTAAAGTTAAACAGCTTTGGAATGGAACTCAGTATTTTGGAAAGCTGAAAGTAATTGATTTAAGTAATTCCAAGGATCTACGCCAAACTCCAAATATCTCTGGACTCATGATATTAAACTTGATGGGTTGTGTAAATCTAAAAGCCCTACCAAGAAAGTTGGAAATGTGTTCCCTGAAAATGTTCCTTCTTTCTGACTGCCGAAACGTTGAAAGACTTCCTGATTTTGGAGCAAACATGAAATCTGTCTCAGTGCTTAATTTAATGAATTGCACAAAACTTTTATGCCTTCCGAACAGCATTAGTAACCTGAAGTCTCTTAGAATTCTCAACATATCAGGATGTATAAAAGTTTGTTGCCTGCCAGATAATCTAAATCGAAACAAGGCTTTGGAGGATCTTGACTTGAGTAGAACTGCTGTTAGAGAATTGTATCCATCCCTACTTCAGTTGGGGAATCTTAAAAAGTTATCTTTCAAGGGATGCAGTGAGCCAGAATCTAACTCCAGCTGGGAGTTGCATCTTCCTTTTGGGCTTAAGTTCAGGTTTTCCTCCAATTTCGGGTTTTCCCCTGCTCTCACAGGCTTAAAATTTCCTCCTTCTATCTCAGGTCTTTCCTCATTAACTGCTTTGGATTTAAGTTATTGCAATCTCACTGATTCTTCAATTCCTCCTGATATCGATTGCTTGTCGTCTTTGGAGAGACTAATACTAAGTGGGAACAATTTTAGACGCCTACCTCTCTACTTTGCTAATCTTTCAAAGCTTCAATATCTCGAATTGGAAGATTGCCGACAACTTATATCCTTACCTGAGCTTCCAACACATGTACGCTTGTATGTATCAGATTCAGATGCAAAGAAGCCTAATTTATTAGATCCTGGAAAGATATGGAAGTTTTTTGAGTCAAGTGACCACGAGCTCTTTCAGTCACCTATGCTTGATTGGCCATGGACCAATCCTATGTACGTGGAAGTCCCACCGTTAACTGACAGTAAGAATTTTTTTCCCATGGAGTCATCATATGTGTCAAAACTTGATACATTTGTATCAGTAACGGTAGGCATCCCTGATGATTGTCATTCAAGTGATTGGTGGGGAGTTTCTGTTTTGGTGGCCTTAGATGCTGGAGCTACGGATGAAGATCCTGTGGCGAAACAAATGCGCTTTTACTGGATCTTTGACTCACTAGAACCTGAAGATGACCCTTCATTATCTCTGGCCTCAGGTTCAACAGCAAATAATGACCTGTACCTTTTCACAATGGTAGTGAGTGGTGACTTTATATACATTCGACATCACCTAAGAGGGGACCAAAAGTGGAAACAACAATTATTTAGCAAGCATCGAAAGCCAGAGTTGAAAGAAAACAGTTTGGTGCGTTTCAAAGTTCAAGTGGGAGGGTGCAAGATAAGGAAGTGTGTGTGGCGTGTGTTGCGTGAGGAAGATTTTGGTAAAGACTTGCAAAAGGTGAATAGCAGCAGTCAATCTTATACGACTCGTTCCCGGGGTCTGAGCAAACCAACCGATAATCTAATTGTTAGAGATAGAAAGTTATAG 3387 0.3871 MEDCTQTSKWKYQVFLSFRGEDTRLGFTDHLYAALVRKSIITFRDDEELDRGEVISQKLLHAIEESLSAIVIISKNYASSTWCLDELLKILESKHLLGQQVFPIFYGVDPSDVRNQRGSFAEAFKKHEEKVTENKEKLQKWRDALREVANLSGWDSKDQHETELIEEVVAQVWKKLELKFPTYNDGLVAIDTRLKDLYSILKLGSEDVRFIGIWGMGGIGKTTLATAFFKKIRSHFDVSCFISNVREASGERDQGLLQLQNKILSHLNIKGMVIETLSEGKDSLRNLLSNKKVLLVLDDVCSKTQLENLAGNQEWFGQGSRIIVTTRDKHLLISHAVLFEMYESKILNKSESFLLFCEKAFKINEPKDDYLKLSHSVVEYAGGLPLALEVLGSFLCGRSLSDWEDALIKIKKVPHDDILNKLRISYDMLEDEHKTLFLDIACFFKGWYKHKVIQLLGSCGLHPTVGINVLIEKSLLTFDGRVIGMHDLLEEMGKTEVFLESPNDPGRRSRLWSLEDIDQVLRKNKGSEIVQGIVLKSSPSKLYEAHWDPEAFSKIYNLRLLVVLCDMHLPLGLKCLPSSLKVLIWWGYPLNTLPLEVQLDELVHIQMINSKVKQLWNGTQYFGKLKVIDLSNSKDLRQTPNISGLMILNLMGCVNLKALPRKLEMCSLKMFLLSDCRNVERLPDFGANMKSVSVLNLMNCTKLLCLPNSISNLKSLRILNISGCIKVCCLPDNLNRNKALEDLDLSRTAVRELYPSLLQLGNLKKLSFKGCSEPESNSSWELHLPFGLKFRFSSNFGFSPALTGLKFPPSISGLSSLTALDLSYCNLTDSSIPPDIDCLSSLERLILSGNNFRRLPLYFANLSKLQYLELEDCRQLISLPELPTHVRLYVSDSDAKKPNLLDPGKIWKFFESSDHELFQSPMLDWPWTNPMYVEVPPLTDSKNFFPMESSYVSKLDTFVSVTVGIPDDCHSSDWWGVSVLVALDAGATDEDPVAKQMRFYWIFDSLEPEDDPSLSLASGSTANNDLYLFTMVVSGDFIYIRHHLRGDQKWKQQLFSKHRKPELKENSLVRFKVQVGGCKIRKCVWRVLREEDFGKDLQKVNSSSQSYTTRSRGLSKPTDNLIVRDRKL* 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3266 1128 Gene3D Ribonuclease Inhibitor 794 905 IPR032675 -
Lja2g3266 1128 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 440 IPR027417 -
Lja2g3266 1128 Pfam TIR domain 11 182 IPR000157 GO:0007165
Lja2g3266 1128 Gene3D - 5 175 IPR035897 -
Lja2g3266 1128 ProSiteProfiles TIR domain profile. 10 176 IPR000157 GO:0007165
Lja2g3266 1128 PRINTS Disease resistance protein signature 210 225 - -
Lja2g3266 1128 PRINTS Disease resistance protein signature 287 301 - -
Lja2g3266 1128 PRINTS Disease resistance protein signature 381 395 - -
Lja2g3266 1128 PRINTS Disease resistance protein signature 620 636 - -
Lja2g3266 1128 SMART till_3 11 151 IPR000157 GO:0007165
Lja2g3266 1128 SMART LRR_typ_2 839 861 IPR003591 -
Lja2g3266 1128 SMART LRR_typ_2 814 838 IPR003591 -
Lja2g3266 1128 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 807 881 IPR044974 GO:0006952
Lja2g3266 1128 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 624 773 IPR044974 GO:0006952
Lja2g3266 1128 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 624 IPR044974 GO:0006952
Lja2g3266 1128 Pfam NB-ARC domain 205 412 IPR002182 GO:0043531
Lja2g3266 1128 SUPERFAMILY "Winged helix" DNA-binding domain 417 521 IPR036390 -
Lja2g3266 1128 Gene3D - 176 337 IPR027417 -
Lja2g3266 1128 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 807 881 - -
Lja2g3266 1128 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 624 773 - -
Lja2g3266 1128 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 7 624 - -
Lja2g3266 1128 Coils Coil 124 144 - -
Lja2g3266 1128 Gene3D - 346 430 IPR042197 -
Lja2g3266 1128 Gene3D Ribonuclease Inhibitor 534 793 IPR032675 -
Lja2g3266 1128 SUPERFAMILY L domain-like 547 885 - -
Lja2g3266 1128 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 154 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3266 Lja-Chr2 72518700 72522965 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3266 7 768 WRKY Transcription Factor Family AT4G12020 29.782 3.70e-89 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3266 - - mtr:MTR_3g080470 1674.83