Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3263 ATGGAGAAAACTTGCTTCATCTTCATTCTTGTCTTGTCATTCCACCATATCATGGCAGCCCCAGACATAAGCAACACCAATTCCACAGACCAATCTGCACTTCTTGCCTTCAAATCTTATATCACCTTTGATCCTCAAGATACCTTGACCAATAATTGGTCTACCTCTTCCTCTGTGTGCAACTGGTTTGGGGTAACTTGTGATGTCAAAAATGGGAGGGTCATAGGTGTAGCTCTCACCAACATGAAATTAAATGGGACCCTTCCACCTCACTTAGGAAACTTAACTTTCCTTGTTGATCTTGACCTTCACAACAATAGCTTTCATGGAACTTTACCAAAAGGGTTATCCTTGTTACCTAGATTGAAGGTGGTCAACTTGTGCACCAACAGTTTCGGTGGAGGATTTCCATCATGGATTGGGGAGTTATCTAAACTCCAAAATTTGAGTCTTTGCAATAACACTTTTTCAGGTTCAATTCCTTCATCCCTATCCAATTTGTCAGAACTGGAGGCTTTGGATTTGAGCTTTAATTTTTTATATGGAAGCATTCCACCTGAGCTTGGAAGGCTTCAAAATTTGAAGGTATTGAATTTGGGGTACAATCAACTTTCCAGTGATATCCCTTCTTCAATCTTCAATATCTCCACGTTGGAAGTGATTAGATTGGAGTATAACTCTTTATCAGGAAGCATCCCTAAAAAACTTGGTGATCTACCACAACTAAGAAGCATAAGTTTGAGCAAAAACAACCTTTCAGGCTCAATTCCGTCATCCTTCTTCAATTTGTCCACGCTTCAAGAGATTCAATTTATTTACAATAACCTATCTGGCTCGTTGCCACCGGATATGTGTCACACGTTTCCCATGCTTCAATTGCTTGACCTATCTGGGAATTCACTTTTTGGTCAAATTCCATCAAGTTTGAATCAATGTAAGGAGCTCAAGTATCTGAGGATGATCAGTAATCGATTATCTGGAAACCTGCCCAGTGATGTCGGAAGATTATCTATGCTTGAGGAGTTGGACCTTAGTAACAACAATCTAACAGGTTCACTTCCTCCGTCTCTTTTCAACATATCCTCTTTGAGACTAATAAATCTTCGAAACAACTTCTTCAATGGCCAACTTCCTGAGGAGATGTGTCAGCATGCCAAGTCCCTCCAACAAATTTCTATCTTAAATAACAAAGTTGGGGGAATCATTCCAAGGTCTATTAACAACTGCACCTCCCTCAAACGCTTATTTTTGGGAGGAAATTTTTTTACAGGTACCATACCTCATGAGATTGGTGACTACCTAAGAAACCTTGAAAAATTGCATTTGCAAGGTAACAGACTGAGAGGGTCTATTCCAACAAGCATCTTCAACATCTCAGGGCTAATTAGTTTGTCACTATCAAATAACCAACTGTCAGGCAACATTCCAATTAAAGCACATCATAGCATGTCCAACCTCCAGTTCTTGTACCTTTCAGCTAACAATCTCAGTGGAGAAATTCCCAGTGGCCTTTTCAATGCTACAGAGCTTCTTGAACTAGTACTTGCCAACAATACATTAACAGGAATCATACCTGAATCAGTTGGGAATTTAAGAAATCTCCAACTCTTTTATCTGATAGGGAACCAATTGACTAGTGATCCAGCCTCTTCAGAAATGGGTTTCCTAACTTCATTGACCAATTGTAGACAATTGGAAAAAATTCTGCTATCATTCAATCCTCTTAACGGAACACTTCCAAATTCTATTGGAAACTTTTCAAACACTCTACAAACTTTGGATGCCTGGAGGTGTAATATCAAGGGTGAAATCCCTTCACAGATCGGCAATTTAAAGAACTTGTTTGACATCAATCTAAACGAAAACCAACTTACAGGTCATGTTCCTAGTACAATTGGCACTTTGCAGCTTCTCCAACGTTTGGATCTTTCATTCAACAAACTAAATGGTTTAATCCCAGATCAGATTTGCCATTTGCTTAAACTGAATGAGTTGCGCCTTAGCGAAAATCAGATTTCTGGGCCAGTTCCAGAATGCTTAAGGTTTCTTACTTCTCTAAGAAACCTTTACTTGGATTCCAATTACTTGAACGCTACAATACCCTCTTCCCTTTGGAGCCTCACAGATATCTTGGAGGTGAACTTATCCTCTAATGGTTTTGTAGGGTCACTGCCAGATGAGTTAAGTGCCATGTTTGCTCTGATAAAATTGGACATATCAAACAATTACCTTTCAGGGGAACTTCCAATTGGTATTGGTGGCTTGCAAAAGATAATGAACTTGTCGTTAGCTAATAATATGTTACAAGGGCGTATTCCTGATTCAGTTGGAAACATGTTAAGCTTGGAATTTTTGGACCTTTCTCATAACCTTTTATCAGGCATCATCCCCAAGTCAATTGAGAAACTTCTTTATCTCAAATCCATCAACTTGTCTTATAATAAACTAGAAGGTGAAATTCCTTCTGGTGGCAGTTTCATAAATTTCACAGCTCAATCCTTCAACATGAACTCAGCACTTTGTGGGAAACCTGAGCTAGAAGTACCACCATGTCCAAGTCATAGTGCGAAACATAACAGGACAAGAAACAAACTTTTACTGAAATTGATTATACCATTAATTTTTGCTGGCATGTTTCTTGTTTTTGCAATTCTTCTGATATACCGGAAACAATGCAACAGAGGTTCAAATAACTTGGATTTTCCAACACTTCTAACTACAAGTAGAATTCCCTACCATGAGCTTGTGGAGGCAACACATAAATTTGACGACAGCAATCTTGTTGGAAGAGGAAGTTTTGGTTCTGTGTACAAGGGTAAGCTTTCAAATGGACTAATGGTTGCAATTAAAGTATTCCATTTTGAGAATGAGCAAGAAACATCAAGGAGTTTTGATAAGGAATGTGAAGCATTGTGCAATCTTCGCCATCGTAATCTAGTTAAAGTCATCACTAGTTGTTCCAATGCCTTTGATTTCAAGGCCCTGGTAATGGAATTTGTGCCTAACGGGGACTTGGAGAAGTGGTTGTATTCTCATAACTATTTCCTAAGTTTCATGCAAAGACTAAACATAGTGATAGATATTGCATCTGCCTTGGAGTATCTCCATCATGATAACCCCAACTCTGTTGTGCACTGTGACCTGAAGCCAAGCAATGTTTTGTTGGATGAAGATATGGTAGCTCATGTGTGTGATTTTGGCATATCTAAACTCTTGGAAGAAGGGCAACTTCAAGTGCATACAAACACTCTTGCAACTCCTGGTTATATTGCACCAGAATTTGGATCGGAAGGCATTGTGTCCATTAAAGGAGATGTTTACAGCTTCGGTATTATGCTTATGGAACTATTTACAACAAAGAGACCAACAGATCAAATGTTTGTAGGGGGAATAAGTTTAAGGTCATGGATCCAAGAGTCAATGCCAAATAAGATTATTCAAGTTATAGACCCGAATCTGATGGAGGGAGAGGAACAATTTATTTCTGCCAAGGAAGCAGCTATATCAAATATCATGTTGTTGGCTTTGAATTGCTCTGCAGACTCCCTTGATGAGAGGATGAGTATGGATGAAGTCTTACGTCGCTTGATCAAAATCAAAACCACATTTCAGCAAGGAAATTCAAGTTAG 3630 0.3893 MEKTCFIFILVLSFHHIMAAPDISNTNSTDQSALLAFKSYITFDPQDTLTNNWSTSSSVCNWFGVTCDVKNGRVIGVALTNMKLNGTLPPHLGNLTFLVDLDLHNNSFHGTLPKGLSLLPRLKVVNLCTNSFGGGFPSWIGELSKLQNLSLCNNTFSGSIPSSLSNLSELEALDLSFNFLYGSIPPELGRLQNLKVLNLGYNQLSSDIPSSIFNISTLEVIRLEYNSLSGSIPKKLGDLPQLRSISLSKNNLSGSIPSSFFNLSTLQEIQFIYNNLSGSLPPDMCHTFPMLQLLDLSGNSLFGQIPSSLNQCKELKYLRMISNRLSGNLPSDVGRLSMLEELDLSNNNLTGSLPPSLFNISSLRLINLRNNFFNGQLPEEMCQHAKSLQQISILNNKVGGIIPRSINNCTSLKRLFLGGNFFTGTIPHEIGDYLRNLEKLHLQGNRLRGSIPTSIFNISGLISLSLSNNQLSGNIPIKAHHSMSNLQFLYLSANNLSGEIPSGLFNATELLELVLANNTLTGIIPESVGNLRNLQLFYLIGNQLTSDPASSEMGFLTSLTNCRQLEKILLSFNPLNGTLPNSIGNFSNTLQTLDAWRCNIKGEIPSQIGNLKNLFDINLNENQLTGHVPSTIGTLQLLQRLDLSFNKLNGLIPDQICHLLKLNELRLSENQISGPVPECLRFLTSLRNLYLDSNYLNATIPSSLWSLTDILEVNLSSNGFVGSLPDELSAMFALIKLDISNNYLSGELPIGIGGLQKIMNLSLANNMLQGRIPDSVGNMLSLEFLDLSHNLLSGIIPKSIEKLLYLKSINLSYNKLEGEIPSGGSFINFTAQSFNMNSALCGKPELEVPPCPSHSAKHNRTRNKLLLKLIIPLIFAGMFLVFAILLIYRKQCNRGSNNLDFPTLLTTSRIPYHELVEATHKFDDSNLVGRGSFGSVYKGKLSNGLMVAIKVFHFENEQETSRSFDKECEALCNLRHRNLVKVITSCSNAFDFKALVMEFVPNGDLEKWLYSHNYFLSFMQRLNIVIDIASALEYLHHDNPNSVVHCDLKPSNVLLDEDMVAHVCDFGISKLLEEGQLQVHTNTLATPGYIAPEFGSEGIVSIKGDVYSFGIMLMELFTTKRPTDQMFVGGISLRSWIQESMPNKIIQVIDPNLMEGEEQFISAKEAAISNIMLLALNCSADSLDERMSMDEVLRRLIKIKTTFQQGNSS* 1210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3263 1209 PRINTS Leucine-rich repeat signature 339 352 - -
Lja2g3263 1209 PRINTS Leucine-rich repeat signature 779 792 - -
Lja2g3263 1209 SMART serkin_6 922 1203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g3263 1209 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 287 430 - -
Lja2g3263 1209 SUPERFAMILY Protein kinase-like (PK-like) 897 1201 IPR011009 -
Lja2g3263 1209 SMART LRR_sd22_2 191 217 - -
Lja2g3263 1209 SMART LRR_sd22_2 779 800 - -
Lja2g3263 1209 SMART LRR_sd22_2 239 265 - -
Lja2g3263 1209 SMART LRR_sd22_2 143 169 - -
Lja2g3263 1209 SMART LRR_sd22_2 336 362 - -
Lja2g3263 1209 SMART LRR_sd22_2 434 460 - -
Lja2g3263 1209 SMART LRR_sd22_2 483 506 - -
Lja2g3263 1209 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1043 1055 IPR008271 GO:0004672|GO:0006468
Lja2g3263 1209 Gene3D Transferase(Phosphotransferase) domain 1 1000 1208 - -
Lja2g3263 1209 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 142 284 - -
Lja2g3263 1209 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 385 1205 - -
Lja2g3263 1209 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 208 328 - -
Lja2g3263 1209 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 5 144 - -
Lja2g3263 1209 Gene3D Ribonuclease Inhibitor 27 182 IPR032675 -
Lja2g3263 1209 Gene3D Ribonuclease Inhibitor 183 286 IPR032675 -
Lja2g3263 1209 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 142 284 - -
Lja2g3263 1209 ProSitePatterns Protein kinases ATP-binding region signature. 928 950 IPR017441 GO:0005524
Lja2g3263 1209 Gene3D Ribonuclease Inhibitor 554 860 IPR032675 -
Lja2g3263 1209 SUPERFAMILY RNI-like 481 822 - -
Lja2g3263 1209 Pfam Protein tyrosine and serine/threonine kinase 927 1195 IPR001245 GO:0004672|GO:0006468
Lja2g3263 1209 SUPERFAMILY L domain-like 27 286 - -
Lja2g3263 1209 Gene3D Ribonuclease Inhibitor 287 553 IPR032675 -
Lja2g3263 1209 ProSiteProfiles Leucine-rich repeat profile. 781 802 IPR001611 GO:0005515
Lja2g3263 1209 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Lja2g3263 1209 Gene3D Phosphorylase Kinase; domain 1 896 999 - -
Lja2g3263 1209 Pfam Leucine rich repeat 240 301 IPR001611 GO:0005515
Lja2g3263 1209 Pfam Leucine rich repeat 120 178 IPR001611 GO:0005515
Lja2g3263 1209 Pfam Leucine rich repeat 638 696 IPR001611 GO:0005515
Lja2g3263 1209 Pfam Leucine rich repeat 435 496 IPR001611 GO:0005515
Lja2g3263 1209 Pfam Leucine rich repeat 757 816 IPR001611 GO:0005515
Lja2g3263 1209 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 385 1205 - -
Lja2g3263 1209 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 208 328 - -
Lja2g3263 1209 ProSiteProfiles Protein kinase domain profile. 922 1203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g3263 1209 ProSiteProfiles Leucine-rich repeat profile. 338 360 IPR001611 GO:0005515
Lja2g3263 1209 Pfam Leucine Rich Repeat 193 212 IPR001611 GO:0005515
Lja2g3263 1209 Pfam Leucine Rich Repeat 339 357 IPR001611 GO:0005515
Lja2g3263 1209 SUPERFAMILY RNI-like 197 584 - -
Lja2g3263 1209 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 5 144 - -
Lja2g3263 1209 SMART LRR_typ_2 167 190 IPR003591 -
Lja2g3263 1209 SMART LRR_typ_2 659 682 IPR003591 -
Lja2g3263 1209 SMART LRR_typ_2 288 312 IPR003591 -
Lja2g3263 1209 SMART LRR_typ_2 434 458 IPR003591 -
Lja2g3263 1209 SMART LRR_typ_2 635 658 IPR003591 -
Lja2g3263 1209 SMART LRR_typ_2 191 215 IPR003591 -
Lja2g3263 1209 SMART LRR_typ_2 683 707 IPR003591 -
Lja2g3263 1209 SMART LRR_typ_2 531 554 IPR003591 -
Lja2g3263 1209 SMART LRR_typ_2 239 263 IPR003591 -
Lja2g3263 1209 SMART LRR_typ_2 336 360 IPR003591 -
Lja2g3263 1209 SMART LRR_typ_2 95 119 IPR003591 -
Lja2g3263 1209 SMART LRR_typ_2 779 802 IPR003591 -
Lja2g3263 1209 SMART LRR_typ_2 483 507 IPR003591 -
Lja2g3263 1209 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 287 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3263 Lja-Chr2 72360969 72378749 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3263 1 1200 Receptor kinase-like Gene Family AT5G46330 34.337 0.0 591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Lja2g3263 PK_Tyr_Ser-Thr 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3263 - K13420 lja:Lj0g3v0291039.1 1388.63