LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja2g3255	ATGATGTGTATCCGAATATGCGATTATAGTCATTCCAAGGTCCATTCTCATGAGAGGAGCAGCAAACAAGCAAGAAAAAGTTATCACAATGATACTTCACTAGATTTAAGGAGCACCAATCTCACATCAAGTTCCAACATCCAGTTTGCAGTTGCAGTAACAATGTCGGATGACCTGCTTGCTCATTTCTCATCCAACTCTTCCAACCAATCGGACCAGTCTCTGCCTTCAAAGATGGCAAAGCTGGAAGCTCGCATGGTGGGGAAGGCTACTACTTCCTCCACTGCTCAGCAGCCAGGTTGGTCCTCTGTTTCTTCAGCTGGGAAATTCAGTGGAGCTGCTGAGGGTTTGCTTGAACCATCCACTTCCAGTGATTCTGATGATGATAATGGTGAGGAATTCCTAATTCAAGCCAACACACAGAAACGCCGAAAACTTGAAGAAGATGATAACTCTAATGTTTTTGAACATGTTGAGGGTGGTACTGATGGAAGACAAACTAGTTTAGAGACTGTGGAGACAAAAGTTAACGTTGATGTGAATAGAAAGAAACATGGTCGTGGAAGAGGGAGTTCTGGTTCAGGTAGGGGTCGGGGTTCCAGGGTTAACGATCAGACCAAATCACGAATATCTCCTCAAGATGTTTTGGCTTTTAATGGTCAGATTGAGAATGTATACCATAAGGATGGCAAAGTCAAAGATCAGATTCATGATGACAGTCGTGCTTCATTAGAGGAGGAGGTTGCATCTTTACGTGCAAAAGTTGTTGTGTTGGAGGAAGACTTGCATAAATCAAAGCAAGAAACCTCTGATTCTCACAATCTTTGTCAACAGTTAGAAAAGGAACTGAAGGACCTGAGAGATCATGAACAGAAAATGAAGCCCAAGAGAATGAAAGTAATATCAGATTTGCTGATATCTGTTTCAAAGGCTGAGAGACAAGAAGCAAGGCTGAAAGTACGACAAGACTCATTGAGACTTGGAAATGTTGGTGTTATTAGAGCTGGGACTGTCATATTAGAAACCTGGGAAGATGGTCAAGCATTAAAGGATCTGAATGCGCAGCTTAAACAACTAATAGAAACAAAGGAGGCAATTGAGCGGCAGCGCAAATTATTCAAGAAAAAACAGTCTGATAAGGGTGATGGAACAGAAGTGGAGGCTGGACTAGCAGAAGATGTTCTCATCCATGAGGAAATCTATAAGTCTCGACTAGCTAGCATTAAACGAGAGGAAGAAACTATTTTGCGGGAGAGGGATCGCTACGAACTGGAGAAAGGGAGGTTGATTCGTGAAATGAAACGCATACGGGATGAAGATGGTTCACGGTTTAACAATTTTCAGATTCTAAATCATCGTTATGCCCTTCTAAACCTTCTTGGGAAGGGGGGTTTTAGTGAGGTGTACAAGGCTTTTGACATGGTGGAGCATAGATACGTTGCATGCAAGCTGCATGGTTTAAATGCTCAATGGAGTGAGGAGAAGAAGCAAAGTTACATACGACACGCAATTCGTGAATATAACATTCACAAGACCCTAGTCCATCGTCACATTGTTCGGTTATGGGACATCTTTGAGATCGATCATAATACATTCTGTACTGTTCTAGAGTACTGTAGTGGGAAGGATCTTGATGGTGTCCTTAAAGCAACTCCTATATTGCCTGAGAGGGAGGCTAGGGTCATTCTAGTTCAGATTTTTCAAGGCCTTATTTACATGAATAAAAGAACACAGAAGATTATTCATTATGATTTAAAACCAGGAAATGTTCTGTTTGATGAGCTCGGTGTTGCCAAAGTGACTGATTTTGGTCTTAGTAAGATAGTGGAGGATGATGTGGGATCCCAGGGCATGGAACTTACATCCCAGGGAGCTGGAACATATTGGTATTTGCCTCCTGAATGCTTTGAGCTCAGCAAGACACCTCTTATATCATCAAAGGTTGATGTCTGGTCTGCTGGTATTTTGTTCTATCAAATGCTGTTTGGCAAACGTCCTTTCGGACATGACCAAACACAGGAAAGAATACTTCGTGAAGACACAATCATTAAGGCGCGCAAGGTTGAGTTTCCTCCGCGACCTGCTGTTTCTAATGAGGCAAAGGATTTAATTCGGAGGTGTCTCACATATAACCAAGCTGAGAGACCAGATGTATTAACCATTGCACAAGATCCATATCTCACATATGCAAAGAAGTGA	2199	0.4216	MMCIRICDYSHSKVHSHERSSKQARKSYHNDTSLDLRSTNLTSSSNIQFAVAVTMSDDLLAHFSSNSSNQSDQSLPSKMAKLEARMVGKATTSSTAQQPGWSSVSSAGKFSGAAEGLLEPSTSSDSDDDNGEEFLIQANTQKRRKLEEDDNSNVFEHVEGGTDGRQTSLETVETKVNVDVNRKKHGRGRGSSGSGRGRGSRVNDQTKSRISPQDVLAFNGQIENVYHKDGKVKDQIHDDSRASLEEEVASLRAKVVVLEEDLHKSKQETSDSHNLCQQLEKELKDLRDHEQKMKPKRMKVISDLLISVSKAERQEARLKVRQDSLRLGNVGVIRAGTVILETWEDGQALKDLNAQLKQLIETKEAIERQRKLFKKKQSDKGDGTEVEAGLAEDVLIHEEIYKSRLASIKREEETILRERDRYELEKGRLIREMKRIRDEDGSRFNNFQILNHRYALLNLLGKGGFSEVYKAFDMVEHRYVACKLHGLNAQWSEEKKQSYIRHAIREYNIHKTLVHRHIVRLWDIFEIDHNTFCTVLEYCSGKDLDGVLKATPILPEREARVILVQIFQGLIYMNKRTQKIIHYDLKPGNVLFDELGVAKVTDFGLSKIVEDDVGSQGMELTSQGAGTYWYLPPECFELSKTPLISSKVDVWSAGILFYQMLFGKRPFGHDQTQERILREDTIIKARKVEFPPRPAVSNEAKDLIRRCLTYNQAERPDVLTIAQDPYLTYAKK*	733

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja2g3255	732	MobiDBLite	consensus disorder prediction	85	108	-	-
	Lja2g3255	732	ProSitePatterns	Protein kinases ATP-binding region signature.	460	483	IPR017441	GO:0005524
	Lja2g3255	732	CDD	STKc_TLK	453	726	-	-
	Lja2g3255	732	Pfam	Protein kinase domain	455	727	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja2g3255	732	Coils	Coil	349	376	-	-
	Lja2g3255	732	PANTHER	MIXED LINEAGE PROTEIN KINASE	55	732	-	-
	Lja2g3255	732	Coils	Coil	272	292	-	-
	Lja2g3255	732	Gene3D	Transferase(Phosphotransferase) domain 1	445	732	-	-
	Lja2g3255	732	Coils	Coil	405	439	-	-
	Lja2g3255	732	Coils	Coil	241	268	-	-
	Lja2g3255	732	MobiDBLite	consensus disorder prediction	139	211	-	-
	Lja2g3255	732	MobiDBLite	consensus disorder prediction	196	211	-	-
	Lja2g3255	732	ProSiteProfiles	Protein kinase domain profile.	454	727	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja2g3255	732	MobiDBLite	consensus disorder prediction	139	156	-	-
	Lja2g3255	732	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	580	592	IPR008271	GO:0004672\|GO:0006468
	Lja2g3255	732	SMART	serkin_6	454	727	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja2g3255	732	PANTHER	BNAC09G36930D PROTEIN	55	732	-	-
	Lja2g3255	732	SUPERFAMILY	Protein kinase-like (PK-like)	446	728	IPR011009	-
	Lja2g3255	732	MobiDBLite	consensus disorder prediction	88	108	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja2g3255	Lja-Chr2	71885807	71896722	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja2g3255	437	732	MAP Kinase Kinase Kinase	AT3G13530	26.733	2.51e-27	117

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TLK	Lja2g3255		Pkinase	1.7e-59	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja2g3255	K08864		-	gmx:100805168	1156.35