Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3254 ATGTCTAGCGTCATGGAGGATATCAACAACTATATCCTAGTTTCAGACTCTCAGGATGAAGGTGAGAGAAGAGATTTTGATTTAAATGGAGATCCTCAAGCTTCTCCCAAAAATGAAGTGCCTTTTAATTCTCAGGTTTCTGCTATTGATAACAACATGCCAATGGGTGACGATCTAGTGCCATTCGCTCCTCCTGAAGGATATGCTACAAAAGATAGTCATCAACAACACAAAAATGGGAAGCAAGTAGACTTAGCAATTCATGATACTAATAAAGGTAAAATGCCAATGTATTGTAACGAGGAAGTCGGTGCAAAAGTTGATGAAGGCTGGTCAATCACCAAATATTTTCAATTAGGAGAAAAAAGCAACAAAAATGGAGCCACTCAAGGAAACATCTTGCCTTCTGAAGAGGTTGCTGCTACTGCTGCTCCAGAATCTAGTTCAAAAAGGAAGATCTTCGATTTAGATTTCAATTATTATAGCAAACGACTTACTAGGACGAACCGTCTCCTGCCAAAAGTAGTTGTCCAAGTTGAGAGCGCAGTGGACGTGCTAGATGATGGTTACCGCTGGCGTAAGTATGGACAAAAGTTTATCCAAGGAAATCTGAAGCCTAGGCGCTACTTCAAGTGCACAACAAATGTTGGATGTCCTGTTATAAAACAAGTTGAAAGGGATCCACACAATTTGACATATGTGGTCACCAGTTATGAGGGAAAACATAATCATGAGCTGCCCTTGGGAAAACTCATAGATTTCTCATTTGATGCTGATGAATTTCCTCTAACTGGTAATTCGTTGGGGACTATTGCAATACCTAGGAATGCCAATATTTCAAGACCTGAAGCAAATCCCACAGACGACCATGATTTTCTGAAGCTAACTTTGGGTCAGAATTTCAGTAATGATCATGTGGATGCTGGGTCTTCCTCTACAAGCCAAATTCCATAG 954 0.4025 MSSVMEDINNYILVSDSQDEGERRDFDLNGDPQASPKNEVPFNSQVSAIDNNMPMGDDLVPFAPPEGYATKDSHQQHKNGKQVDLAIHDTNKGKMPMYCNEEVGAKVDEGWSITKYFQLGEKSNKNGATQGNILPSEEVAATAAPESSSKRKIFDLDFNYYSKRLTRTNRLLPKVVVQVESAVDVLDDGYRWRKYGQKFIQGNLKPRRYFKCTTNVGCPVIKQVERDPHNLTYVVTSYEGKHNHELPLGKLIDFSFDADEFPLTGNSLGTIAIPRNANISRPEANPTDDHDFLKLTLGQNFSNDHVDAGSSSTSQIP* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3254 317 MobiDBLite consensus disorder prediction 15 40 - -
Lja2g3254 317 ProSiteProfiles WRKY domain profile. 181 247 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja2g3254 317 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 124 289 IPR044810 GO:0003700
Lja2g3254 317 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 124 289 - -
Lja2g3254 317 Pfam WRKY DNA -binding domain 187 245 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja2g3254 317 SUPERFAMILY WRKY DNA-binding domain 180 247 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja2g3254 317 Gene3D WRKY domain 172 248 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja2g3254 317 SMART WRKY_cls 186 246 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3254 Lja-Chr2 71877248 71881414 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3254 173 250 WRKY Transcription Factor Family AT2G38470 60.256 4.82e-30 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja2g3254 WRKY 4.9e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3254 K18835 - lja:Lj5g3v0550200.2 290.812