Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3249 ATGGATAGCGGTACAATGGTGATGGTTGCAGGGAACGGAGTTAGTATTGACTCTCATTACATACTAGATGGCTGTGATAATGGTGTAGCCAGCTATCGGACACTGAATGCTGCAGAACCCATAAGAAGACTGAATGCTGCACAACCCATAAGAGATATGGACTCTCATTACATAATCGATGGTTCTCATTATGCTTCCTATAGGGCTCAGACAATTCATTCACCGAATGCTGCTGCAATCCCCATGAGGAGGGGTTCTGAGACTGGCTATAGGCACATTAACCATCCACCATCCATGTTATATCATCCCGATGCTACATTCACCCAGAGGAGGGGTTTTGGGACTGACTATAGGCACATTAGCCATCCACCATCCATGTTATATCATCAAAATGCCCCATTCACCATGAGGAGGAGGGGTTTTGGGACTGGTTATAGGCACATTAGCCATCCACCATCAATTATTGGACATCAAACTCTTCCTCCTACTGGTTTTCACCAACTTGATGATGTTGCTTTATTGATTAATCGTATCAACAATGTGCGCATCAGAACTGAAAACACATCTTATGAGGAGTTTCTTGCATTGGCTGAGCGTGTTGGCAATGTAAGCACAGGCTTATCGGATGAAATCATTACAGCCCAAATGAAGACCAAAGATTATATCGGAACAGGAGATACGGAAGAAAATGATTTGTGCGTGATATGTCAGGATGAATATACAACTCAAGAAAAAGTTGGAGTTCTTCAATGTGGACATGAATATCATGCAAGCTGCTTAAGGAAATGGCTCCAAATGAAAAATGTTTGCCCCATGTGCAAGTCAGAAGCATTGAGTGCTCAATGA 846 0.4279 MDSGTMVMVAGNGVSIDSHYILDGCDNGVASYRTLNAAEPIRRLNAAQPIRDMDSHYIIDGSHYASYRAQTIHSPNAAAIPMRRGSETGYRHINHPPSMLYHPDATFTQRRGFGTDYRHISHPPSMLYHQNAPFTMRRRGFGTGYRHISHPPSIIGHQTLPPTGFHQLDDVALLINRINNVRIRTENTSYEEFLALAERVGNVSTGLSDEIITAQMKTKDYIGTGDTEENDLCVICQDEYTTQEKVGVLQCGHEYHASCLRKWLQMKNVCPMCKSEALSAQ* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3249 281 ProSiteProfiles Zinc finger RING-type profile. 233 274 IPR001841 -
Lja2g3249 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 185 278 IPR045191 GO:0061630
Lja2g3249 281 SMART ring_2 233 273 IPR001841 -
Lja2g3249 281 Pfam Ring finger domain 232 274 IPR001841 -
Lja2g3249 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 209 279 IPR013083 -
Lja2g3249 281 PANTHER OS04G0185500 PROTEIN 185 278 - -
Lja2g3249 281 SUPERFAMILY RING/U-box 226 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3249 Lja-Chr2 71670115 71671811 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3249 176 278 C3H Transcription Factor Family AT2G15530 43.519 6.26e-29 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3249 K19041 - gmx:100808611 170.629