Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3206 ATGGAGATGCCAAGAGGAGAAGTTGCTCTATGTTTTGTGACATTGTTCTTCTTGTTTTGGAGCTCTGCAATTGCTGTGCTCTCTCCTAAGGGTATAAACTTTGAAGTGCAAGCTTTAATTGGCATAAAAGCTTCTCTTGTGGATCCTCATGGTGTTCTAGAGAACTGGGATAGGGATGCAGTTGATCCTTGTAGCTGGAATATGGTCATGTGCTCCCCAGAAAACCTTGTCATTAGTCTGGGCATTCCCAGTCAAGGTTTATCTGGTATTCTATCTCCAAGCATAGGAAACCTCACAAATCTTCAGACTGTAGGGCTACAGAATAACAACATAAATGGCCCAATCCCTTCAAAGTTGGGAAAACTTTCCAAGCTTCAAACTCTTGATCTCTCTGATAATTTCTTCAGTGGGGAAATTCCTCCATCTCTGGGTCATCTGAGAAGCCTCCAGTACTTGCGGCTCAACAATAACAGTTTTACTGGGGAATGCCCAGAGTCACTGGCTAACATGACAGAGCTAGCTTTTCTGGACCTGTCCTTCAACAATCTGAGTGGCCCTGTTCCTAGAATTTTGGCCAAATCATTCAGTATTGTTGGAAATCCCCTTGTCTGTGCTACAGGAAAAGAAGCACACTGCCCTGGGATGACACCCATGCCTATGTCCATGAATTTAAACAGCACTGAGGATGCTGCTATACAATCTGGCAGACCAAAAACTCACAAAATGGCCATCGCCTTTGGTTCGAGTCTGGGGTTCCTCTGCTTGATAGTTCTTGGTTTTGTACTTGTTCTGTGGAGGAGGCACAAGAATAATCAACAAGCATTCTTTGATGTTAAAGACCGGCATCATGAAGAAGTCTACCTAGGAAACTTGAAGAGGTTCATATTAAGAGAACTCCAGATTGCCACTAACAACTTCAGCAACAAACAAATCCTGGGAAAGGGTGGTTTTGGAAATGTCTACAAAGGAGTTCTCTCAGATGGAACTTTTGTAGCTGTCAAGAGGCTTAAAGATGGCAGTGCCATTGGGGGAGAGATACAATTTCAGACCGAAGTCGAAATGATCAGCTTGGCAGTGCACCGGAATCTCCTGAAACTGTATGGGTTTTGTGTGACACCAACAGAAAGGCTTCTGGTTTACCCTTACATGTCCAATGGCAGTGTTGATTCTCGTCTCAAGGGTGAGCTAAATTGTAAACCTGTCTTGGACTGGAGGACTAGGAAGCAAATTGCCTTAGGAGCAGCAAGGGGATTGTTATACCTTCATGAGCAGTGTGATCCAAAGATAATCCATAGAGATGTGAAAGCTGCAAATATATTGCTTGATGATTATTGTGAGGCAGTTGTTGGAGATTTTGGGTTGGCAAAGCTTTTAGATCACAAAGATTCACATGTCACAACTGCTGTAAGGGGCACTGTGGGGCACATTGCACCAGAATATCTCTCCACAGGACAGTCTTCTGAAAAGACTGATGTCTTCGGATTTGGCATTTTGCTTCTTGAATTGGTCACTGGCCACAGAGCTCTAGAATTTGGGAAGGTAGCATACCAAAAAGGAGCCATGCTTGATTGGGTAAAGAAAATTCATCAGGAGAAGCAACTTGAGTTGCTTATTGACAAGGATCTGAAGAACAACTATGACAGGATTGAGCTGGAGGAAATGGTTCAAGTGGCACTCTTGTGCACACAATATCTTCCAGGGCACAGACCCAAAATGTCTGAAGTTGTACGCATGCTTGAAGGTGATGGGCTAGTAGATAAATGGGAAGCATCACAAAATGCTGACACAACTAAGTGCAAACCACATGAGCTCTCTGCATCAAATAGATATTCTGATCTTACTGATGACTCTTCATTTTTAGTCCAGGCCATGGAGCTCTCAGGTCCAAGGTGA 1893 0.4363 MEMPRGEVALCFVTLFFLFWSSAIAVLSPKGINFEVQALIGIKASLVDPHGVLENWDRDAVDPCSWNMVMCSPENLVISLGIPSQGLSGILSPSIGNLTNLQTVGLQNNNINGPIPSKLGKLSKLQTLDLSDNFFSGEIPPSLGHLRSLQYLRLNNNSFTGECPESLANMTELAFLDLSFNNLSGPVPRILAKSFSIVGNPLVCATGKEAHCPGMTPMPMSMNLNSTEDAAIQSGRPKTHKMAIAFGSSLGFLCLIVLGFVLVLWRRHKNNQQAFFDVKDRHHEEVYLGNLKRFILRELQIATNNFSNKQILGKGGFGNVYKGVLSDGTFVAVKRLKDGSAIGGEIQFQTEVEMISLAVHRNLLKLYGFCVTPTERLLVYPYMSNGSVDSRLKGELNCKPVLDWRTRKQIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHKDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELVTGHRALEFGKVAYQKGAMLDWVKKIHQEKQLELLIDKDLKNNYDRIELEEMVQVALLCTQYLPGHRPKMSEVVRMLEGDGLVDKWEASQNADTTKCKPHELSASNRYSDLTDDSSFLVQAMELSGPR* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3206 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 429 441 IPR008271 GO:0004672|GO:0006468
Lja2g3206 630 SUPERFAMILY L domain-like 35 197 - -
Lja2g3206 630 Pfam Leucine rich repeat N-terminal domain 35 72 IPR013210 -
Lja2g3206 630 PANTHER PROTEIN NSP-INTERACTING KINASE 1-LIKE ISOFORM X1 5 630 - -
Lja2g3206 630 SMART serkin_6 306 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g3206 630 ProSiteProfiles Protein kinase domain profile. 306 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g3206 630 Gene3D Phosphorylase Kinase; domain 1 275 382 - -
Lja2g3206 630 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 5 630 - -
Lja2g3206 630 Gene3D Transferase(Phosphotransferase) domain 1 383 599 - -
Lja2g3206 630 Pfam Leucine rich repeat 99 158 IPR001611 GO:0005515
Lja2g3206 630 ProSitePatterns Protein kinases ATP-binding region signature. 312 334 IPR017441 GO:0005524
Lja2g3206 630 Gene3D Ribonuclease Inhibitor 32 214 IPR032675 -
Lja2g3206 630 Pfam Protein kinase domain 307 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g3206 630 SUPERFAMILY Protein kinase-like (PK-like) 283 580 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3206 Lja-Chr2 69353441 69357954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3206 10 630 Receptor kinase-like Gene Family AT5G16000 75.159 0.0 952
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Lja2g3206 Pkinase 7.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3206 - - gmx:100806650 1081.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g3206 2 69353441 69357954 Lja2g3206 2 69353441 69357954 ECH
Lja2g3206 2 69353441 69357954 Lja1g2690 1 31831091 31835732 PCT