Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3192 ATGGTCGCAAAGCAAGACAAGAAGAAGAAGCCTCGTGGACGCGCTCACAAGCGCATGCAACACAATCGCCGATTCGTCACCGCCGATAACGTTTCTCTTCTCTTCTTCTCATTTCCAAATCCACAATCTTCAATTTTAGGGTTTGTTAATGATGTGGATTTTCAGTTCAGTAATTTTATTTTATTTCTTGTTTGTGTGATTTTAGTGGTGGGATTTGGTAAGAAGCGTGGACCAAACTCATCTGAGAAGTGA 252 0.4127 MVAKQDKKKKPRGRAHKRMQHNRRFVTADNVSLLFFSFPNPQSSILGFVNDVDFQFSNFILFLVCVILVVGFGKKRGPNSSEK* 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3192 83 PANTHER 40S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBI 2 28 - -
Lja2g3192 83 PANTHER 40S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBI 66 83 - -
Lja2g3192 83 MobiDBLite consensus disorder prediction 7 21 - -
Lja2g3192 83 MobiDBLite consensus disorder prediction 1 21 - -
Lja2g3192 83 PANTHER 40S RIBOSOMAL PROTEIN S30 2 28 - -
Lja2g3192 83 Pfam Ribosomal protein S30 2 27 IPR006846 GO:0003735|GO:0005840|GO:0006412
Lja2g3192 83 PANTHER 40S RIBOSOMAL PROTEIN S30 66 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3192 Lja-Chr2 68879680 68880263 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3192 11 83 Cytoplasmic Ribosomal Protein Gene Family AT5G56670 43.836 1.76e-10 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3192 K02983 - ath:AT4G29390 68.5514