Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3183 ATGTTGAAATCTTTGTGGAACAGCCTAAGCTTTCAACAGAAATGTCTCCTCCATGAGAAAGAGAATCAAGTTGATAGTGGCGGGTCGGCGCCGGCCGGTGCAAACTTGGAAGTGCAGTTGGCGGAGAATTGCAATAATTGCGGGGAGGAAAGCAACTTATGCAAGTGTGATCATCATATCAATGTAAAGAGTGTAGCAGCTGGGGGCACCAACTTAGCTGAAGAGCATGACCATGAAGCCAATAGTTCTTTAGCTCATACAGTCATTAATATGGTCGGGACGCTCATAGGTCTCGGACAATTATCAACTCCTTACGCTGTAGAACAAGGAGGTTGGGGTGCATCTGCAATTTTTCTTATAGGACTTGGGGTGATATGCACTTACACTTCTCATTTACTTGGGAAATGTCTGAAAAAGAATCCCAAGTTAAGAGGCTATGTGGACATTGGGTATCATGCATTTGGAGCAAAGGGAAGATTCATAGTTGCAACATTCATCTACATGGAGACCTTCATGTCTCTTGTTTCATACACCATCTCATTGCATGACAACTTAATGACAGTGTTACATCTGAAGCTACATTTGGCTAAATTATCTTCACCACAGCTTCTGACTATTGGCGCTGTGCTGATTGTTCTGCCTAGTTTGTGGCTCAGAGACCTGTCTTCCATATCTTTCCTTTCAATTCTTGCTGTTCTCATGACTCTAGTCATTTTTGTGTCTGTAGCAGCCACTGGAGTTGTTGGAGATGTCAGGGTTAATCATAAAATATCCTTCCTCCACCTCCACAACATTCCATCAATATCTGGCCTTTACATCTTCAGCTATGCAGGACACATTGTTTTCCCTAATTTACATAAGGCCATGAAAGACCCCTCAAAGTTTACCAAGGCTTCTATTGTGAGCTTCACACTAGTTACAACACTCTACACAATATTGGGGTACATGGGTGCAAAAATGTTTGGACCGGAAGTCAATTCCCAAGTAACTCTCAGCATGCCCCCTAAGCAAATTGTGACAAAAATTGCGTTATGGGCAACCGTTCTGACACCTATGTCCAAATATGCTCTTGCATTTGCACCATGCGCTATTCAGCTGGAGCATAGACTTCCTAATTCCATGAGTGGCCGGACCAAAATGATAGTTAGGGGCCTCATAGGTTCATCTTTGCTTTTGGTTATACTAGCCTTAGCTCTAACAGTGCCTTATTTTGAGCATGCTCTCAGCCTCACTGGTTCTGTTGTTAGTGTTGCCATTTGTTTGATTTTCCCATGTGCTTTCTACATGAAGATTTTTTGGGGCCACATAACAAAGCCTCTCTTAATCCTGAACATGTCTATCATCACTTTAGGGTTTCTTCTTGGAGTGATGGGTACCATTTCCACCACAAAATCACTAGTGAAAATATTTCTAGCTTCTTAA 1422 0.4241 MLKSLWNSLSFQQKCLLHEKENQVDSGGSAPAGANLEVQLAENCNNCGEESNLCKCDHHINVKSVAAGGTNLAEEHDHEANSSLAHTVINMVGTLIGLGQLSTPYAVEQGGWGASAIFLIGLGVICTYTSHLLGKCLKKNPKLRGYVDIGYHAFGAKGRFIVATFIYMETFMSLVSYTISLHDNLMTVLHLKLHLAKLSSPQLLTIGAVLIVLPSLWLRDLSSISFLSILAVLMTLVIFVSVAATGVVGDVRVNHKISFLHLHNIPSISGLYIFSYAGHIVFPNLHKAMKDPSKFTKASIVSFTLVTTLYTILGYMGAKMFGPEVNSQVTLSMPPKQIVTKIALWATVLTPMSKYALAFAPCAIQLEHRLPNSMSGRTKMIVRGLIGSSLLLVILALALTVPYFEHALSLTGSVVSVAICLIFPCAFYMKIFWGHITKPLLILNMSIITLGFLLGVMGTISTTKSLVKIFLAS* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3183 473 PANTHER OS05G0424000 PROTEIN-RELATED 65 470 - -
Lja2g3183 473 Pfam Transmembrane amino acid transporter protein 81 461 IPR013057 -
Lja2g3183 473 PANTHER AMINO ACID TRANSPORTER AVT1H 65 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3183 Lja-Chr2 68468343 68471933 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3183 44 468 Amino Acid or Auxin Permease AAAP Family AT5G16740 58.118 2.15e-157 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3183 - - gmx:100787423 642.884