Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3166 ATGTTCCCTTTCAGCTCAAGCCCTTACCCTTCCTTTCCTTCATCTTCTTCTTCTCCTTTCCACCCTTTTTCTTTCCTCAATCCTGAAAATGTTTCAGCAAGTAACAACACCCTTGTTCTTGATCCACTTTCTGTTCCCTACATACCACAAACTCACCACCACCACCACCACCATCACAACAACTCTCCAGCACTCCCAGAAACACTAACCAATTTAGCGGTTGCCGGCGGTCCTGATAACTGTTCGGCAATGCCTAAACCAGATCCTAGTGGCCCTCACTATGGCATTTCCTGTCTCCTCACTAAGAAACCAGCTAAGAAAGACCGGCACAGCAAGATTTACACCTCTCAGGGGCTGAGGGACCGGAGGGTGAGGCTCTCAATCGAGATCGCAAGAAAGTTCTTTGATCTTCAAGACATGCTAGGGTTTGATAAAGCCAGCAACACCCTCGAGTGGCTCTTCAACAAGTCCAAGAGAGCCATCAAGGATCTCGCTCGGAGCAAGAACAGCAACAGTGGTGGTGGTGGTGACCATGACAACAACAAGAGCTTCTCTTCCGAAGAAGATGAAGACTGTGAAGTTGTCTCATCAAACCTACAACAAGATCAAGAGCAAAGGTTAGATTCAAACCATAATAAAGGGGGTGGTGCTGAAAAAGAGCTGTTGAATAAGTTGAAAAGGGCACAGAAGGAACCTTCTTGTGCTCGTGCAAAGATAAAGGAATCAAGGGAGAAAGCAAGAGCAAGAGCAAGGGAAAGGACAAGTAACAAGATCTGCAACAACAACAACAACACCACGCTGAAGAAAAAGCTCCCTGCTACTGAAAACTCTCTAATCTTACAGCAACCAAAGTCTCCACCAAGGATGCTTCACCACCCTCACCCTCATCATCTTCATCACCACCTTGTGGGCGGTGAGGCGCCAAGAGATGACTTCAACGTTATTGAGGAATCCATTGTGATCAAGAGAAAATTGAAGCCATGGTTGATGTCTTCTTCTTCTCATCATCATCATCACCAACAACAACAACACCATAATCTTGTGATCCCTAAGGAAGGGAGTTTCAACAACAACAGTGAATACCACTCCTTCCCCAATTCATCTCCAAATTGGGATAACAACACTAGCAACAGTGCCACTAGCCGCTCCAACTTTTGTACAATAGCCAGCATGAACCTATCAACAGATTTTCTTTTTTTTTTATAA 1206 0.4519 MFPFSSSPYPSFPSSSSSPFHPFSFLNPENVSASNNTLVLDPLSVPYIPQTHHHHHHHHNNSPALPETLTNLAVAGGPDNCSAMPKPDPSGPHYGISCLLTKKPAKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKRAIKDLARSKNSNSGGGGDHDNNKSFSSEEDEDCEVVSSNLQQDQEQRLDSNHNKGGGAEKELLNKLKRAQKEPSCARAKIKESREKARARARERTSNKICNNNNNTTLKKKLPATENSLILQQPKSPPRMLHHPHPHHLHHHLVGGEAPRDDFNVIEESIVIKRKLKPWLMSSSSHHHHHQQQQHHNLVIPKEGSFNNNSEYHSFPNSSPNWDNNTSNSATSRSNFCTIASMNLSTDFLFFL* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3166 401 MobiDBLite consensus disorder prediction 358 377 - -
Lja2g3166 401 Pfam TCP family transcription factor 105 259 IPR017887 -
Lja2g3166 401 MobiDBLite consensus disorder prediction 165 269 - -
Lja2g3166 401 MobiDBLite consensus disorder prediction 166 180 - -
Lja2g3166 401 MobiDBLite consensus disorder prediction 206 254 - -
Lja2g3166 401 ProSiteProfiles TCP domain profile. 106 164 IPR017887 -
Lja2g3166 401 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 19 397 IPR005333 GO:0003700
Lja2g3166 401 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 19 397 - -
Lja2g3166 401 MobiDBLite consensus disorder prediction 255 269 - -
Lja2g3166 401 ProSiteProfiles R domain profile. 240 257 IPR017888 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3166 Lja-Chr2 67837402 67840198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3166 101 266 TCP Transcription Factor Family AT1G67260 42.045 3.64e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lja2g3166 TCP 5.6e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3166 - - gmx:100801549 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g3166 2 67837402 67840198 Lja1g5397 1 90386529 90387482 ECH
Lja2g3166 2 67837402 67840198 Lja4g2007 4 20765754 20767695 ECH
Lja2g3166 2 67837402 67840198 Lja2g3166 2 67837402 67840198 ECH
Lja1g2670 1 31484929 31486838 Lja2g3166 2 67837402 67840198 ECH