Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3145 ATGCGAACAAGTTGCAATGGCTGTCGGGTGTTAAGAAAGGGTTGTGGTGAAGATTGTAACATCAAACCCTGTTTGCAGTGGATTGAGAGCCCAGAATCACAAGCACATGCAACTTTGTTTCTTTCCAAGTTCTATGGTCGCGTTGGCCTGAGTAACCTCATCAATGCTAGCCCTCAACACCTTCGTCCAGAGCTTTTTCGTTCATTGTTATATGAGGCATGTGGTCGAATCGTGAACCCTATTAATGGGTCTGTGGGTCTATTATGGTCTGGGAGCTGGCAACTATGCCATGCTGCTGTGGAAGCTGTTTTGAAGGGTGCGCCTATCATGCCAATAACTTTTGAGCCAACGACAAACATGTGGAGCCCACCTCCTAACATCTACGACATACGTCATGTGTCCAAAGATGAAAGCTCAATCGTACCCATTGAAGGTGAGGGTGTCAAGACTAGGTCCAAGCTGAAGCAGGTTATTAGCTCAGTCATTAAGCCAAAGGCCACCAGGAGAAACCATTCTGTGTGTCATGAGTCATCATCGAGCCATCGGTTTGAGAGTGAAAGTGCTGTATCCGCTGAGGCTTCGATCAATATCCATGATGAACTTGATTCAAACTCAAAGCTGAGTGACCACCAAGCTAGAGAAAATGGTAATGAAGTTGGTCTGGAGCTGAAGCTCGGGTTCGAATCCACTTCTCGTGTGGATTGCTCTATGCCCATGAAAAAGAGAAAGATTGATATGAAGAACTGGTTGTGTTAA 756 0.4577 MRTSCNGCRVLRKGCGEDCNIKPCLQWIESPESQAHATLFLSKFYGRVGLSNLINASPQHLRPELFRSLLYEACGRIVNPINGSVGLLWSGSWQLCHAAVEAVLKGAPIMPITFEPTTNMWSPPPNIYDIRHVSKDESSIVPIEGEGVKTRSKLKQVISSVIKPKATRRNHSVCHESSSSHRFESESAVSAEASINIHDELDSNSKLSDHQARENGNEVGLELKLGFESTSRVDCSMPMKKRKIDMKNWLC* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3145 251 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 243 - -
Lja2g3145 251 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 243 - -
Lja2g3145 251 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Lja2g3145 251 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3145 Lja-Chr2 67091345 67093176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3145 1 246 AS2 family AT3G02550 50.988 5.34e-82 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja2g3145 LOB 9.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3145 - - aprc:113867933 290.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g3145 2 67091345 67093176 Lja2g3145 2 67091345 67093176 ECH
Lja1g2468 1 28562823 28564584 Lja2g3145 2 67091345 67093176 ECH