Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3138 ATGGAACAGGTTAAAAGTGAAACCATGGACTTGGGTTGGGAAGAAGAACTGAGGAAGTTTCAGAATGTTATGGCCTCAGGGACCAAGCCTTTGAAAATGGAAGTCATGGCCAAGTTGTCCCGTTTCTTTGAGCATGACCCTAAGCGTGCATTATCTCGTGCCATATCTATTCTCAATGAGATTCTTGCTCAAAGTATACCAAATGATCCTTCTCCTTCACTTCAAGAGGTTGTTGCTTACTGCTTGATGTGCATTTCTTGCCAAGATGATGGTGCTGCATTGACAATTGCAATGGGTACACAGGGTGTTACACATTCTTTGATAAGGTTATTGGCTCATTCGAAGGGGAAGATGCGGGAAGTTCTGATTAAATTGTTCATGGTTCTTGTCAATTTCAGTAATGTAAGTAGGAAAACATTTTTTTTCGGTGGCGGATTTCGAGTCATCATGAACTTGTTGAATTCAAATAAGAATGATAATATTAGGTTGTATCTGTTAGAGATTTTGAGTATGTTAGCATTGCAAAAGGATGTCAGGAATGAACTCATTAGATTAGGAGCTCTTCATCTTATTGTGGAGGCTGCTGGTAGAGGCAGCATGATCTCTAGGGAAAGAGCATGTCAATCAATTGAATTTCTAGGAGCAGTACCACTTCTTGTGGAGTTGTTGCGTGATGGAGATCAAACAACTAAGCTTATAGCTGCCAAATATATTCGTAGGTTATCTGCTCATGTTAATGGTAACACTAGACCATTTACTGAAGCTGGGGCTATCCTTCTTTTTGTTGAGCTCCTTCAAGGACCTGATCCTTATGGTAAGGGGATAGCTGAGGACGTGCTTTCTGAATTGGCTATTAGAGAGCATAGTGATGTTGAAATTGTTGGGCACTTGGTGAGAATTCTTAGAGAAGGTGATCATGAATCAAAAGTATCAGCGACCAATGTGATGTGGGATCTATCCGGTGGCCGAATCTCATCATCTGTGATCCGGGATTCGGGCGCAATCCCAGTCCTTGTTGTGCTTTTAAGGAGTGGAACTGAGAAGGTAATGGAGACTGTTTCTAGGGTATTTGCTGAGCTAAGCTATGATGGAGCTGATAGATTGGCCCTTGCTAAGGCAGGAGCAATTCCAATTCTCATGGAACTGAGGGATAATGCTGCAGAGGCTATTTTCAATTTTTATGAAGATCCATTATATCACCATAGAGTATCCATGCAATTAATACTAATTCACACTCGTGCATCAAATGGGCACATGATAAGATCTTCGCGAAGAATGAGTGTCGAGCAGCTCATTGGGAACCTGCAAGATTTTCTATAA 1320 0.4136 MEQVKSETMDLGWEEELRKFQNVMASGTKPLKMEVMAKLSRFFEHDPKRALSRAISILNEILAQSIPNDPSPSLQEVVAYCLMCISCQDDGAALTIAMGTQGVTHSLIRLLAHSKGKMREVLIKLFMVLVNFSNVSRKTFFFGGGFRVIMNLLNSNKNDNIRLYLLEILSMLALQKDVRNELIRLGALHLIVEAAGRGSMISRERACQSIEFLGAVPLLVELLRDGDQTTKLIAAKYIRRLSAHVNGNTRPFTEAGAILLFVELLQGPDPYGKGIAEDVLSELAIREHSDVEIVGHLVRILREGDHESKVSATNVMWDLSGGRISSSVIRDSGAIPVLVVLLRSGTEKVMETVSRVFAELSYDGADRLALAKAGAIPILMELRDNAAEAIFNFYEDPLYHHRVSMQLILIHTRASNGHMIRSSRRMSVEQLIGNLQDFL* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3138 439 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 10-LIKE 4 433 - -
Lja2g3138 439 PANTHER U BOX DOMAIN-CONTAINING 4 433 - -
Lja2g3138 439 SMART arm_5 244 285 IPR000225 GO:0005515
Lja2g3138 439 SMART arm_5 322 362 IPR000225 GO:0005515
Lja2g3138 439 SMART arm_5 202 243 IPR000225 GO:0005515
Lja2g3138 439 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 333 375 IPR000225 GO:0005515
Lja2g3138 439 Gene3D - 25 210 IPR011989 -
Lja2g3138 439 SUPERFAMILY ARM repeat 62 395 IPR016024 -
Lja2g3138 439 Gene3D - 211 398 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3138 Lja-Chr2 66783892 66785311 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3138 226 382 U-box Gene Family AT3G46510 30.864 1.65e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3138 - - lja:Lj0g3v0252669.1 610.527