LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja2g3119	ATGAATAATTCTCCGAAAGAGGTTGTATCACCATTGAATTGCAACGTTAAGGGCAATCTTTCTATCCAACCCAATGCCTCCAAGGCTCCAACATCCCCGAAGCAACCTTTCTTCATTGGTGTTGCTGGCGGAACTGCATCTGGGAAAACAACTGTGTGCAACATGATAAACAATCAGCTTCATGATCAACGTCTCGTCCTCATTAATCAAGACTCATTTTACTACTCGTTGAGTGAGGAAGAGCTACATAAAGTTAATGAGTACAACTTTGATCATCCTGATGCCTTTGATATTGCACTTATGCTTTTAATCATGGAGAAGTTAAAACATGGACAAGAAGTTACCATACCAAATTATGATATTAGTGGCCATAAGAGAACTGAACCAGAACGACAGGTTCACCCTGCAGACATCATAATTTTAGAAGGAATATTAGTTCTTCATGATCCTCGTGTTCGTGATATTTTGAACATGAAGATTTTTGTTGATGAAGATTCTGATGTGCGTCTTGCACGAAGGATTCAACGTCTCTCTATTGAACGTGGGAGGAACATTAAAAATGTTCTAGATCAATATTCCAGATTTGTAAAGCCCAGTTTTGAAGATTTTGTAATGCCAACAAAAAAATACGCGGATATAATCATTCCAGGTGGAGGAGATAATGATGTAGCTGTTGACTTGATAGTACAAAATATACGCACAAAGCTTGGCCAGCATGATTTGTGTAAAATATATCCAAATATTTTTGCTATTGCTTCAAATTTTCAGATAAAGGGAATGCATACTCTCATTCGTGATTCTAGAACAACAAAGCATGATTTTGTCTTTTATTCAGATCGTCTAATTAGGCTGGTCGTCGAACATGGATTGGGTCATCTTCCTTTTACTGAAAAGCAGGTCATGACACCAACAGGAGTTGTATACTCTGGTGTAGTTTTCTGCAGCAGGTTGTGCGGTGTATCAGTTATTAGAAGTGGAGAAAGCATGGAAAATGCATTAAGAGCATGTTGTAAAGGAATCAAAATTGGAAAAATCCTTATTCATGGACAAGGCACGAATGGTCGACAGTTAATTTACGAGAAGCTCCCCAAAGACATTGCTAGTCGCCATGTGTTGCTACTTGATCCAGTTCTCGCTACAGGAAATTCTGCAGTTAAAGCTATTACTCTACTTCTTAAGAAGGGTGTCCCAGAATCAAACATCATATTTCTAAATTTAATAGCAGCACCACAAGGAATAAATGAAGTTTGTGGGAGATTTCCAATGCTAAAACTTGTGACATCAGAGATTGATGCGTCACTAAATGAGAATTCTCGTGTGATACCTGGGTTGGGTGAGTTTGGCGATCGTTACTTTGCCACTGATGATTAG	1371	0.3851	MNNSPKEVVSPLNCNVKGNLSIQPNASKAPTSPKQPFFIGVAGGTASGKTTVCNMINNQLHDQRLVLINQDSFYYSLSEEELHKVNEYNFDHPDAFDIALMLLIMEKLKHGQEVTIPNYDISGHKRTEPERQVHPADIIILEGILVLHDPRVRDILNMKIFVDEDSDVRLARRIQRLSIERGRNIKNVLDQYSRFVKPSFEDFVMPTKKYADIIIPGGGDNDVAVDLIVQNIRTKLGQHDLCKIYPNIFAIASNFQIKGMHTLIRDSRTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVMTPTGVVYSGVVFCSRLCGVSVIRSGESMENALRACCKGIKIGKILIHGQGTNGRQLIYEKLPKDIASRHVLLLDPVLATGNSAVKAITLLLKKGVPESNIIFLNLIAAPQGINEVCGRFPMLKLVTSEIDASLNENSRVIPGLGEFGDRYFATDD*	457

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja2g3119	456	Gene3D	-	32	238	IPR027417	-
	Lja2g3119	456	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	31	228	IPR027417	-
	Lja2g3119	456	Pfam	Uracil phosphoribosyltransferase	253	454	-	-
	Lja2g3119	456	Gene3D	-	239	454	IPR029057	-
	Lja2g3119	456	CDD	UMPK	38	235	IPR000764	-
	Lja2g3119	456	SUPERFAMILY	PRTase-like	238	454	IPR029057	-
	Lja2g3119	456	PRINTS	Uridine kinase signature	167	177	-	-
	Lja2g3119	456	PRINTS	Uridine kinase signature	66	77	-	-
	Lja2g3119	456	PRINTS	Uridine kinase signature	111	126	-	-
	Lja2g3119	456	PRINTS	Uridine kinase signature	203	216	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja2g3119	Lja-Chr2	65935501	65946690	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja2g3119	15	456	PRT Gene Family	AT4G26510	72.545	0.0	671

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja2g3119	K00876		-	csin:114323087	686.797

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