Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lja2g3102 | ATGGCCGAGGAAGATAGCTACAACCTCTCTTCTTCTTCCTCACAAGACGAAATCTCCCTTTTCCTCCGTCAGATTCTTCTCTGTTCATCCTCTTCTTCCAACCCCAATATGCCTCCATCCTCAAACTCACCCCTTCATTCCACCGCCGGAGCCTTTCTCTCCGCTCCGCCTCACCCACTGCCTGCTGCAAATGTGTCCTCCTCCTCTCTAGGTATCAGTGAGAACGAGGCTGATGAATATGACTGTGAAAGTGTGGAGTGCATTGAAGCATTGGGTGAAGAGGTTAGGACAAAGTCTGTTCCTTCTTCTTGGAGCTCATCTAAAAGGACTAGAGCAGCAGAGGTTCTTAATTTGTCTGAAAAGAGGAGAAGGAGCAGGATCAACGAGAAAATGAAGGCTTTGCAAAATCTAATTCCAAACTCTAACAAGACTGATAAGGCTTTCATGCTTGATGAAGCTATTGATTACCTTAAACAGCTTCAGCTCCAAGTACAGCCCCTTGAAAATGATCTGCATCCATGA | 522 | 0.4598 | MAEEDSYNLSSSSSQDEISLFLRQILLCSSSSSNPNMPPSSNSPLHSTAGAFLSAPPHPLPAANVSSSSLGISENEADEYDCESVECIEALGEEVRTKSVPSSWSSSKRTRAAEVLNLSEKRRRSRINEKMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQPLENDLHP* | 174 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lja2g3102 | 173 | PANTHER | TRANSCRIPTION FACTOR SPATULA | 10 | 167 | - | - | |
Lja2g3102 | 173 | MobiDBLite | consensus disorder prediction | 32 | 53 | - | - | |
Lja2g3102 | 173 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 111 | 160 | IPR011598 | GO:0046983 | |
Lja2g3102 | 173 | PANTHER | TRANSCRIPTION FACTOR PIF1-RELATED | 10 | 167 | IPR031066 | - | |
Lja2g3102 | 173 | MobiDBLite | consensus disorder prediction | 32 | 49 | - | - | |
Lja2g3102 | 173 | Gene3D | - | 106 | 171 | IPR036638 | GO:0046983 | |
Lja2g3102 | 173 | Pfam | Helix-loop-helix DNA-binding domain | 117 | 161 | IPR011598 | GO:0046983 | |
Lja2g3102 | 173 | SMART | finulus | 117 | 166 | IPR011598 | GO:0046983 | |
Lja2g3102 | 173 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 109 | 169 | IPR036638 | GO:0046983 | |
Lja2g3102 | 173 | CDD | bHLH_AtPIF_like | 111 | 165 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lja2g3102 | Lja-Chr2 | 64979103 | 64981023 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lja2g3102 | 75 | 173 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT4G36930 | 68.269 | 2.87e-33 | 119 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Lja2g3102 | HLH | 1.5e-12 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lja2g3102 | - | - | lja:Lj2g3v1890910.1 | 233.032 |