Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3102 ATGGCCGAGGAAGATAGCTACAACCTCTCTTCTTCTTCCTCACAAGACGAAATCTCCCTTTTCCTCCGTCAGATTCTTCTCTGTTCATCCTCTTCTTCCAACCCCAATATGCCTCCATCCTCAAACTCACCCCTTCATTCCACCGCCGGAGCCTTTCTCTCCGCTCCGCCTCACCCACTGCCTGCTGCAAATGTGTCCTCCTCCTCTCTAGGTATCAGTGAGAACGAGGCTGATGAATATGACTGTGAAAGTGTGGAGTGCATTGAAGCATTGGGTGAAGAGGTTAGGACAAAGTCTGTTCCTTCTTCTTGGAGCTCATCTAAAAGGACTAGAGCAGCAGAGGTTCTTAATTTGTCTGAAAAGAGGAGAAGGAGCAGGATCAACGAGAAAATGAAGGCTTTGCAAAATCTAATTCCAAACTCTAACAAGACTGATAAGGCTTTCATGCTTGATGAAGCTATTGATTACCTTAAACAGCTTCAGCTCCAAGTACAGCCCCTTGAAAATGATCTGCATCCATGA 522 0.4598 MAEEDSYNLSSSSSQDEISLFLRQILLCSSSSSNPNMPPSSNSPLHSTAGAFLSAPPHPLPAANVSSSSLGISENEADEYDCESVECIEALGEEVRTKSVPSSWSSSKRTRAAEVLNLSEKRRRSRINEKMKALQNLIPNSNKTDKAFMLDEAIDYLKQLQLQVQPLENDLHP* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3102 173 PANTHER TRANSCRIPTION FACTOR SPATULA 10 167 - -
Lja2g3102 173 MobiDBLite consensus disorder prediction 32 53 - -
Lja2g3102 173 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 111 160 IPR011598 GO:0046983
Lja2g3102 173 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 10 167 IPR031066 -
Lja2g3102 173 MobiDBLite consensus disorder prediction 32 49 - -
Lja2g3102 173 Gene3D - 106 171 IPR036638 GO:0046983
Lja2g3102 173 Pfam Helix-loop-helix DNA-binding domain 117 161 IPR011598 GO:0046983
Lja2g3102 173 SMART finulus 117 166 IPR011598 GO:0046983
Lja2g3102 173 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 109 169 IPR036638 GO:0046983
Lja2g3102 173 CDD bHLH_AtPIF_like 111 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3102 Lja-Chr2 64979103 64981023 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3102 75 173 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 68.269 2.87e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja2g3102 HLH 1.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3102 - - lja:Lj2g3v1890910.1 233.032