Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3100 ATGGATTGTGATGAAGACCCTCCTCAAAACCCAGCTAAAAGGCACAAATGCTCAGCATGCTATAAGCAGTATAAGAAGAAAGAATCTCTGATCGAGCACATGAAGGCCTCATATCACTCTGTCCATCAGCCCAGATGTGGTGTCTGTCAAAAGTATTGCAAATCTTTCGAATCCCTAAGGGAACATCTTTTCGTGACATGTCGCCTATCATCTCCTGGTCCTTTTACATTGTGTGCCGTCCTGTTACAAGGAGTATACACAATGCCCTATATAGGCTCCCAAATTGATCTTCGTGATTCGTCTGATGAAAATCACCCTGGAGCTATTGCAATAGACTGTGAAAGGGTTGGTGGTGGAATATGCTTGGTCGATGAAGATGAGAATTTACTTTACCATGCATATGTACAGCCTCCAATCCCTGTTACAAACTATAGACATGATATAACTGGGATAACAGAAGATGATCTTAGAGATGCGAGGCCCCTTAAAGAAGTTCAAGAGAAGATATTGCAAATTTTATACAATGGAGAATTCATGAGCAAAGTTAGATTGGACGGAGGGAAGGCCAGGTTTCTTGTTGGGCATGCATTAGCACATGATTTAGATTGCTTGAAAATTAACTATCCAGATCACATGCTGAGAGACACTTCAATGTACCGTCCATTGATGAAAACAAACTTTGCTAGCCATTCACTCAAGTATCTTACCAGAACATATCTAGGTTATGATATCCAATGCGGCACTTATGACCCATATGAAGATAGTATTTCTGCAATGAGGCTGTATAAGAGAATGCGAGGTCAAAATCATCAGGGGAAAAACTGCGGAACATTGACTCCAAATAACAACTTTGTCGGCAAGTTTGATGGTTGGATATCTAAGGAACTTGACAACCTCACACCAGATGAACTCTTTGACATGTCAAAATCAGACTACAAGTGTTGGTGTTTGGATTTGAAACCAAGATTGGCAGCCTGA 978 0.409 MDCDEDPPQNPAKRHKCSACYKQYKKKESLIEHMKASYHSVHQPRCGVCQKYCKSFESLREHLFVTCRLSSPGPFTLCAVLLQGVYTMPYIGSQIDLRDSSDENHPGAIAIDCERVGGGICLVDEDENLLYHAYVQPPIPVTNYRHDITGITEDDLRDARPLKEVQEKILQILYNGEFMSKVRLDGGKARFLVGHALAHDLDCLKINYPDHMLRDTSMYRPLMKTNFASHSLKYLTRTYLGYDIQCGTYDPYEDSISAMRLYKRMRGQNHQGKNCGTLTPNNNFVGKFDGWISKELDNLTPDELFDMSKSDYKCWCLDLKPRLAA* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3100 325 SMART exoiiiendus 107 271 IPR013520 -
Lja2g3100 325 Gene3D Classic Zinc Finger 3 66 - -
Lja2g3100 325 CDD REX4_like 109 263 IPR037431 GO:0006364|GO:0008408
Lja2g3100 325 PANTHER EXONUCLEASE FAMILY PROTEIN 82 321 - -
Lja2g3100 325 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 12 64 - -
Lja2g3100 325 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 82 321 - -
Lja2g3100 325 Gene3D - 105 279 IPR036397 GO:0003676
Lja2g3100 325 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 44 IPR013087 -
Lja2g3100 325 ProSitePatterns Zinc finger C2H2 type domain signature. 17 39 IPR013087 -
Lja2g3100 325 Pfam Exonuclease 127 241 IPR013520 -
Lja2g3100 325 PANTHER EXONUCLEASE FAMILY PROTEIN 12 64 - -
Lja2g3100 325 SUPERFAMILY Ribonuclease H-like 109 265 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3100 Lja-Chr2 64922981 64925512 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3100 6 318 C2H2 Transcription Factor Family AT2G48100 44.444 1.55e-98 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3100 K18327 - gmx:100805841 475.707