Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3082 ATGGGTCTCAAACAAAACCGACAACCTGCAGAGTTCTTTTGCAAAACTCTTACAGCTAGTGATACAAGCACTCATGGTGGATTTTCTGTGCCTCGAAGAGCAGCTGAGAAAATATTCCCCCCCTTGGATTATTCTATGCAACCTCCCGCTCAGGAGCTTGTTGCCAAAGATTTGCACGACACTACATGGTCCTTTAGACATATTTATCGGGGTATTGCCACTTCTTTGCATCTGTTGACTACTGGTTGGAGTGTATTTGTCAGCACAAAAAGACTATTTGCTGGAGATTCTGTTCTATTTATCAGAGATGAAAAACAGCAACTTCTTTTAGGCATAAGGCGTGCTAATAGACAGCAACCAGCACTTTCTTCATCAGTAATATCCAGTGACAGCATGCACATTGGCATTCTTGCTGCAGCAGCTCATGCTGCTGCAAATAACAGCCCATTTACTATATTTTACAATCCAAGGGCCAGCCCCTCAGAATTCGTTATTCCATTGGCCAAGTTTAACAAAGCCATGTACACTCAAGTTTCTCTAGGGATGAGATTTAGGATGATGTTCGAAACAGAGGAGTCTGGAGTACGCAGACATATGGGTACAATCACTGGGATTAGTGACTTGGATTCTGCCCGATGGAAAAGTTCACAGTGGCGCAATCTTCAGGTATTATTAAACCGCTCTTATTTTTACTTTGTAGCTTTGTGTTTTTATACTTCACCAAAAAGAAAGAGATGTATTGTTTGGATAACTGTTTGA 759 0.415 MGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVAKDLHDTTWSFRHIYRGIATSLHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKFNKAMYTQVSLGMRFRMMFETEESGVRRHMGTITGISDLDSARWKSSQWRNLQVLLNRSYFYFVALCFYTSPKRKRCIVWITV* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3082 252 Gene3D - 11 115 IPR015300 -
Lja2g3082 252 ProSiteProfiles B3 DNA-binding domain profile. 13 116 IPR003340 GO:0003677
Lja2g3082 252 Gene3D - 177 229 - -
Lja2g3082 252 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 223 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lja2g3082 252 SUPERFAMILY DNA-binding pseudobarrel domain 4 143 IPR015300 -
Lja2g3082 252 PANTHER AUXIN RESPONSE FACTOR 19 1 223 - -
Lja2g3082 252 SMART B3_2 13 116 IPR003340 GO:0003677
Lja2g3082 252 CDD B3_DNA 12 105 IPR003340 GO:0003677
Lja2g3082 252 Pfam Auxin response factor 140 222 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lja2g3082 252 Pfam B3 DNA binding domain 13 115 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3082 Lja-Chr2 63731884 63733197 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3082 1 228 B3 DNA Binding Superfamily AT1G19220 85.526 7.17e-125 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lja2g3082 B3 1.5e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3082 - K14486 cit:102628827 408.297