Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3081 ATGACTCCTCTTTCATGCTTCCTTGTTCTTTTCTCCCTTTCTCTTCTAACACCAAATTTTGTTTCCTCCTCTGCAGTTCGAGATCCTGAGTTGGTTGTCCAAGAAGTACAGAGAAGCATCAACGCCTCAAGAAGAAACTTGGGTTATTTATCATGTGGAACCGGTAATCCCATTGATGACTGCTGGCGATGTGACCCTAATTGGGAGAACAACCGGCAAAGGCTAGCAGATTGCGCCATTGGGTTTGGCAAGGATGCCTTGGGAGGAAAAAATGGTCAAATCTACGTCGTCACTGACTCCGGTGACGACGACCCCGTGAACCCGAGGCCAGGGACACTGAGGTACGGCGCCATACAAGACGAGCCACTATGGATCATCTTTAAGAGAGACATGGTGATTAACTTGAAACAAGAGCTTCTAGTGAACTCCTTCAAGACAATTGATGGAAGGGGTGCTAGTGTTCACATTGCTGGTGGGGGATGCATTACCATTCATTATGTGAGCAATATCATCATCCATGGGATTAACATCCATGATTGCAAGCCCACTGGGAACACCGATATAAGAGATTCCCCACACCATTCTGGGTTTTGGACTGTGTCAGATGGAGATGGTATTTCTATATTTAACTCAAAGCATGTGTGGGTTGATCATTGCTCTTTATCTAATTGCCGTGATGGTCTCATTGATGCCATCCATGGATCCACGGCTATCACTATCTCCAATAACTACATGACCCATCATGACAAAGTCATGCTTTTGGGACACAGTGACTCTTACACACAAGACAAGGACATGCAGGCCACTATAGCCTTTAATCATTTTGGTGAAGGCCTTGTCCAAAGAATGCCAAGGTGTAGACATGGATACTTTCATGTGGTGAACAATGACTACACACACTGGGAAATGTATGCAATTGGTGGGAGTGCTAACCCTACTATCAACAGCCAGGGGAACAGGTTTCTTGCACCAGATAACAGGTTCAGCAAAGAGGTAACAAAGCATGAGGATGCACCGGATAGTGAATGGAAGAGCTGGAACTGGAGATCAGAAGGGGACTTGTTCTTGAATGGAGCATTCTTCAGGTCATCTGGTGCTGGTGCTTCTTCTATGTATGCAAGGGCATCAAGTCTCAGTGCAAGACCATCTTCTCTTGTTGGCTCCATCACTGTCACTGCTGGTACACTCAACTGCAGGAAGGGCTCTCGCTGCTGA 1215 0.4626 MTPLSCFLVLFSLSLLTPNFVSSSAVRDPELVVQEVQRSINASRRNLGYLSCGTGNPIDDCWRCDPNWENNRQRLADCAIGFGKDALGGKNGQIYVVTDSGDDDPVNPRPGTLRYGAIQDEPLWIIFKRDMVINLKQELLVNSFKTIDGRGASVHIAGGGCITIHYVSNIIIHGINIHDCKPTGNTDIRDSPHHSGFWTVSDGDGISIFNSKHVWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQATIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDNRFSKEVTKHEDAPDSEWKSWNWRSEGDLFLNGAFFRSSGAGASSMYARASSLSARPSSLVGSITVTAGTLNCRKGSRC* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3081 404 Gene3D - 55 397 IPR012334 -
Lja2g3081 404 SMART amb_all 130 327 IPR002022 -
Lja2g3081 404 PANTHER PECTATE LYASE 18-RELATED 8 401 IPR045032 GO:0030570
Lja2g3081 404 PRINTS Pollen allergen Amb family signature 346 370 IPR018082 -
Lja2g3081 404 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Lja2g3081 404 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Lja2g3081 404 PRINTS Pollen allergen Amb family signature 102 127 IPR018082 -
Lja2g3081 404 PRINTS Pollen allergen Amb family signature 202 223 IPR018082 -
Lja2g3081 404 PRINTS Pollen allergen Amb family signature 138 154 IPR018082 -
Lja2g3081 404 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Lja2g3081 404 PRINTS Pollen allergen Amb family signature 375 398 IPR018082 -
Lja2g3081 404 PANTHER PECTATE LYASE 8 401 - -
Lja2g3081 404 SUPERFAMILY Pectin lyase-like 39 398 IPR011050 -
Lja2g3081 404 Pfam Pectate lyase 137 321 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3081 Lja-Chr2 63722082 63725404 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3081 7 404 Polysaccharide Lyase AT5G63180 75.622 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3081 K01728 - gmx:100794814 766.918