Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3072 ATGACGGGCGGTCATGGTCATCTCTTCAACAACATCACCGTCGGAGGCCGCGGCGGCACGAATCCAGGCCAGATAAAAATACATCCTGGAGGAATTGTATGGAAAAGACAGGGGGGTGGTAAATCAATTGAGGTTGATAAAGCTGATATAATGGGGGTCACGTGGATGAAGGTTCCAAGGTCTAATCAACTTGGTGTTCAGATCAAAGATGGCTTGTTCTACAAGTTTACTGGATTTCGTGATCAGGATGTTGTAAGCTTGACCGATTTCTTCCAAAACATGTTTGGAATAGCTGTAGAGGAGAAGCAGCTTTCTGTTAGTGGGCGCAATTGGGGAGAAGTTGATCTAAATGGAAATATGCTTGGTTTCATGGTTGGTTCAAAGCAAGCTTTTGAGGTATCTTTAGCGGATGTCTCTCAAACACACCTTCAAGGGAAAAATGATGTGTTATTGGAGTTCCATGTGGATGACACAACTGGAGCTAATGAGAAAGATTCATTGGTGGAGATAAGTTTCCACATACCAAATTCCAACACCCAGTATGTTGGTGATGAAAATCATCCTCCTGCTCAGGTTTTCCGTGATAAAATAATGTCTATGGCTGATGTTGGTGCTGGGGGTGAAGATGCTGTTGTTACATTTGAGGGTATTGCAATCCTTACCCCAAGAGGACGTTACAGTGTTGAGCTACACCTGTCATTCTTGCGACTTCAAGGACAGGCTAATGATTTCAAAATCCAGTATAGCAGTATCGTTCGCATATTTTTACTTCCTAAGTCTAATCAGCCACATACATTTGTCATTATTAGTCTTGATCCCCCTATTCGGAAAGGACAAACTTTGTACCCTCATATTGTGATGCAGTTTGAAACTGATTTAGTTGAACAAAGTGAATTGGCAATAAATGAAGATCTTTATAACACCAAGTACAAGGACAAGTTGGAGCTTTCATACAAGGGTCTGATCCATGAAGTGTTCACCACAATATTACGCGGCTTGTCTGGGTCCAAAGTTACCAAGCCTGGAACATTTAGGAGTTGTCTACATGGTTATGCAGTGAAATCATCTTTGAAAGCGGAAGATGGAATTCTGTATCCCCTTGAGAAGGGCTTCTTTTTTCTACCTAAACCCCCCACTCTTATTCTTCATGATGAGATTGACTATGTGGAATTTGAGCGGGGTGGTACAAATATGCATTATTTTGACCTTCTTATCAGACTAAAATCTGAGCAAGAGCATCTCTTCCGTAATATTCAGAGAAACGAATACGACAATTTGTTAAGTTTTATAAGGTCAAAGAGTTTAAAAATTATGAACTTAGGAGGTGCCCAGCCAACTGTTGGTATGGCTCAGGTTCTTGAGAATGATCATGATGATGCTGTTGATCCACATCTAGAGCGCATTAAAAATGAAGCTGGTGGAGATGAAAGTGATGAGGAGGATGAAGATTTTGTTGTTGACAAGGATGATGGTGGTTCTCCAACTGATGAGTCTGGTGGGGAAGATTCTGATGCTAGTGATAGTGGTGATGAGAAAGAGAAGCCTGCCAAAGTGGAACCAAAGAAGGTTCTGTCTTCTAAGGCATCCAACTCTAAGAGGAAATCAAAAGATGCTGATGAAGATGGAAAAAAGAAAAAACAGAAGAAAAAGGACCCAAATGCACCCAAGAGGGCAATGTCTGGTTTCATGTTCTTTTCTCAAATGGAAAGAGAGAATCTGAAGAAAACTAATCCTGGAATTTCATTTACGGATGTGGGGAGAGTACTTGGAGAGAAATGGAAGAAGATATCAGCGGAGGATAAAGAGCCATATGAGGCAAAAGCCCGTGCTGATAGGAAACGTTACATGGATGAGATTAGTGGCTACAAGAATCCACAACCCATGAATGTTGATTCAGGAAATGAATCTGACAGTGCCTAA 1920 0.413 MTGGHGHLFNNITVGGRGGTNPGQIKIHPGGIVWKRQGGGKSIEVDKADIMGVTWMKVPRSNQLGVQIKDGLFYKFTGFRDQDVVSLTDFFQNMFGIAVEEKQLSVSGRNWGEVDLNGNMLGFMVGSKQAFEVSLADVSQTHLQGKNDVLLEFHVDDTTGANEKDSLVEISFHIPNSNTQYVGDENHPPAQVFRDKIMSMADVGAGGEDAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSIVRIFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFETDLVEQSELAINEDLYNTKYKDKLELSYKGLIHEVFTTILRGLSGSKVTKPGTFRSCLHGYAVKSSLKAEDGILYPLEKGFFFLPKPPTLILHDEIDYVEFERGGTNMHYFDLLIRLKSEQEHLFRNIQRNEYDNLLSFIRSKSLKIMNLGGAQPTVGMAQVLENDHDDAVDPHLERIKNEAGGDESDEEDEDFVVDKDDGGSPTDESGGEDSDASDSGDEKEKPAKVEPKKVLSSKASNSKRKSKDADEDGKKKKQKKKDPNAPKRAMSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKKISAEDKEPYEAKARADRKRYMDEISGYKNPQPMNVDSGNESDSA* 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3072 639 SUPERFAMILY HMG-box 542 624 IPR036910 -
Lja2g3072 639 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 555 623 IPR009071 -
Lja2g3072 639 Gene3D - 341 445 IPR011993 -
Lja2g3072 639 Gene3D - 201 340 - -
Lja2g3072 639 Coils Coil 638 639 - -
Lja2g3072 639 MobiDBLite consensus disorder prediction 505 521 - -
Lja2g3072 639 MobiDBLite consensus disorder prediction 625 639 - -
Lja2g3072 639 CDD HMGB-UBF_HMG-box 555 620 - -
Lja2g3072 639 CDD PH2_SSRP1-like 344 440 - -
Lja2g3072 639 Gene3D High mobility group box domain 538 633 IPR036910 -
Lja2g3072 639 Pfam Structure-specific recognition protein (SSRP1) 108 176 IPR024954 -
Lja2g3072 639 Pfam HMG (high mobility group) box 555 623 IPR009071 -
Lja2g3072 639 Pfam POB3-like N-terminal PH domain 9 101 IPR035417 -
Lja2g3072 639 SMART hmgende2 554 624 IPR009071 -
Lja2g3072 639 SMART Rtt106_2 350 440 IPR013719 -
Lja2g3072 639 Pfam Histone chaperone Rttp106-like 352 438 IPR013719 -
Lja2g3072 639 PRINTS Structure-specific recognition protein signature 376 393 IPR000969 GO:0003677|GO:0005634
Lja2g3072 639 PRINTS Structure-specific recognition protein signature 243 259 IPR000969 GO:0003677|GO:0005634
Lja2g3072 639 PRINTS Structure-specific recognition protein signature 415 433 IPR000969 GO:0003677|GO:0005634
Lja2g3072 639 PRINTS Structure-specific recognition protein signature 266 282 IPR000969 GO:0003677|GO:0005634
Lja2g3072 639 PRINTS Structure-specific recognition protein signature 358 376 IPR000969 GO:0003677|GO:0005634
Lja2g3072 639 PRINTS Structure-specific recognition protein signature 399 415 IPR000969 GO:0003677|GO:0005634
Lja2g3072 639 PRINTS Structure-specific recognition protein signature 221 237 IPR000969 GO:0003677|GO:0005634
Lja2g3072 639 PRINTS Structure-specific recognition protein signature 331 344 IPR000969 GO:0003677|GO:0005634
Lja2g3072 639 MobiDBLite consensus disorder prediction 599 639 - -
Lja2g3072 639 PANTHER FACT COMPLEX SUBUNIT SSRP1-B 5 637 - -
Lja2g3072 639 MobiDBLite consensus disorder prediction 599 619 - -
Lja2g3072 639 CDD PH1_SSRP1-like 209 342 - -
Lja2g3072 639 SUPERFAMILY PH domain-like 208 439 - -
Lja2g3072 639 Gene3D - 5 95 IPR011993 -
Lja2g3072 639 PANTHER FACT COMPLEX SUBUNIT SSRP1 5 637 - -
Lja2g3072 639 MobiDBLite consensus disorder prediction 467 562 - -
Lja2g3072 639 Gene3D - 97 181 IPR038167 -
Lja2g3072 639 MobiDBLite consensus disorder prediction 530 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3072 Lja-Chr2 63454967 63460094 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3072 551 623 ARID Transcription Factor Family AT1G04880 36.986 2.80e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lja2g3072 POB3_N 5.8e-23 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3072 K09272 - gmx:100805034 1088.94