Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3063 ATGGAGGATACTGAACCGGATCATATGAAAAGGCCTCCCCAGCAAAATAATGCAGAAAATGAATGTGCAATATCACTTGTGGTGGTGACTAATGTGGGGCAGGAGAGTCACAGCTCAAAGGATTCCTCTGCTGCAGACAGTAACAAGATCATTGACACACAGATGAAGCGTGCAAGCCCAAATGTTTGTCCTGTTGACCATATTCAGATAGAAAATGATGATGAATGTCAAATCTCGAACACTTCCCCTGATGACATATTTCATATTAATGTCAGTAGTGGACAGCTGTGTCAGAACCCCAATACTACCTCTATATCAATGATCAATACTGATGTAGAAAATGAGGACCAAATAGATATGGAACCACAGATTGGCATGGTGTTTGAATCAGAAGACCATGCTTACAAGTGTTATAGCAAGTATGCTGTTCTGAATGGTTTCAGCGTAAGAAAGGATTTTGTCAACAAAAGTAGGTTAGATGGTGCAGTGATGTCCAGAAGATACACCTGCCACAGACAGGGTTATCGTCCTAACAAGAATACTACAAACCTGAGGAGAATCCAGCACGAAACCAGGACTGGTTGCTTGGCTCATATGACTATTGTTCGTCAGCCGAATGGCAAGTTTCTTGTCACACATTTTGAAAGAGAGCACAATCATGAGTTTGTATCACCGTCTGCTTCTCATATGTTACCATCACAGAGAAAATTGTATTTTGCTCAAGCTCTGGAAACGTGCTTAGTTGAGTCCCAATTGGATGGGGTACCAAAACTAGGAATGAGATTTGACTCAGAGAACCATGCGTATGAATTTTATAATACATATGCTGGACGTGTAGGTTTCAGTGTAAGAAAAGATTATGCAAATAGGAGTAAAGTTGATGGTGCAGTAGCGTCTAGAAGGTTTACTTGTTTCAGGGAAGGTTTTCGGAAGAAAGACAAACAGGATGGGAATGCAAAGAGACCTCGGAAGGATACTAGAATTGGTTGTTTAGCACAGCTGCTTATTTCTCGTCAACCTGATGATAGGTATCATGTAACTCACTTTGAAGAAAAGCATAATCATGAGCTTGTTCCTCCATGTAGAGTTCAAATGTTAAGATCACAGAAGAGATCAGCCGCAACTGAAGTCGAAAACAACATTGTAAATGGAGATGGATCCAACTTACTGCCTAATTCAACCGCTGAAATCAATTGCAGGACAGTTGAAGGTTTTGCTGACCAAGATTATGATCCCATAGGTTATGAGCATAAACTACCTTTCAAATGTACAAGAGAAATAAAAGAGGGAGAAATTGAAAAGATTAAGGACCACTTTCAAAGAAAGCAATCAAAGAACCCTTCTTCCTTTTATGCTTTCCAGCTTGATGCTGGTGATCAACTAACTAATATATTTTGGGCTGATTCAAAGATGATAGTAGACTACAGTGATTTTGGTGATGTTGTTTGTTTTGATAGAAGTTATAAATTTTACAAAGACTGCCGCCCATTTGCTCCATTCCTCGGTGTAAATAATCATAAGCAAATGATTATCTTTGGTGCTGCACTTCTGTATGATGAATCTGTGGAATCTTTAAAGTGGCTGTTTCATGTTTTCATTGAGGCAATGTCTGGAAGGAAGCCAATGACAATCTTAACAGATCAGGATGCAACAATAGCTGAAGCAATCAATTCTGTATTACCTCAAACAAATCACCGAGTTTGTGTATGGCATATCTACCAGGATGCCTTCAAGCAACTGACTCGTATGTCTGTTGAATCTGATTCTTTTGTACATGATTTGAGCAGCTGTGTGTTTAATCATGAGGAAGAAGAGGATTTTGTTAATGCATGGAATGCTCTCCTGGGCAATTATAATCTGTGGGATAATGAATGGTTGTGTGAAATATATGAAAGCAGAGAGCGATGGGCCATACCATATGGAAGACATGTTTTTCATGCTGACATAGCAAACCTGCTGAGAGAAAATCTGACTGGGAACCTGAAAAAGCACTTAAGGAATGACTCAGATGTTCTTTCATTTCTCAAGCATCTTGGGAAGATGGTTACTGATTGGCACTACAAGGAATTAGAAGCCAATTATGACATGAGCCAGCGTATGCCAGCCCTGATGGGGGATGTTGTTACATTAAAGCACGCAAGAGACCCGTATACGCCAGAGATATTTGAGTTATTCCAGAAGGAATATGAAGCAAGTTTAAATCTAGTGGTAAAGCATTGCACTGAGAGTGGATCCCTGTATATTTATAAAGTTAGTATATATGAACAAGCGCGAGAGTACACTGTTACTTTTGATTCTTTTAATGAGAAAATCAGTTGCAGCTGTATGAAATTTGAGTATTTGGGAGTCTTATGCTGCCATGCTTTAAAAGTTCTTGATTATCGGAACATAATGATAGTCCCATCCCAGTACATCTTAAAGAGATGGACAAAAGATGCTAGAATTTGA 2448 0.3926 MEDTEPDHMKRPPQQNNAENECAISLVVVTNVGQESHSSKDSSAADSNKIIDTQMKRASPNVCPVDHIQIENDDECQISNTSPDDIFHINVSSGQLCQNPNTTSISMINTDVENEDQIDMEPQIGMVFESEDHAYKCYSKYAVLNGFSVRKDFVNKSRLDGAVMSRRYTCHRQGYRPNKNTTNLRRIQHETRTGCLAHMTIVRQPNGKFLVTHFEREHNHEFVSPSASHMLPSQRKLYFAQALETCLVESQLDGVPKLGMRFDSENHAYEFYNTYAGRVGFSVRKDYANRSKVDGAVASRRFTCFREGFRKKDKQDGNAKRPRKDTRIGCLAQLLISRQPDDRYHVTHFEEKHNHELVPPCRVQMLRSQKRSAATEVENNIVNGDGSNLLPNSTAEINCRTVEGFADQDYDPIGYEHKLPFKCTREIKEGEIEKIKDHFQRKQSKNPSSFYAFQLDAGDQLTNIFWADSKMIVDYSDFGDVVCFDRSYKFYKDCRPFAPFLGVNNHKQMIIFGAALLYDESVESLKWLFHVFIEAMSGRKPMTILTDQDATIAEAINSVLPQTNHRVCVWHIYQDAFKQLTRMSVESDSFVHDLSSCVFNHEEEEDFVNAWNALLGNYNLWDNEWLCEIYESRERWAIPYGRHVFHADIANLLRENLTGNLKKHLRNDSDVLSFLKHLGKMVTDWHYKELEANYDMSQRMPALMGDVVTLKHARDPYTPEIFELFQKEYEASLNLVVKHCTESGSLYIYKVSIYEQAREYTVTFDSFNEKISCSCMKFEYLGVLCCHALKVLDYRNIMIVPSQYILKRWTKDARI* 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3063 815 Pfam FAR1 DNA-binding domain 138 223 IPR004330 -
Lja2g3063 815 Pfam FAR1 DNA-binding domain 270 359 IPR004330 -
Lja2g3063 815 ProSiteProfiles Zinc finger SWIM-type profile. 760 796 IPR007527 GO:0008270
Lja2g3063 815 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 88 238 IPR031052 GO:0006355
Lja2g3063 815 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 248 815 IPR031052 GO:0006355
Lja2g3063 815 MobiDBLite consensus disorder prediction 1 21 - -
Lja2g3063 815 Pfam MULE transposase domain 481 574 IPR018289 -
Lja2g3063 815 Pfam SWIM zinc finger 760 795 IPR007527 GO:0008270
Lja2g3063 815 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-LIKE 88 238 - -
Lja2g3063 815 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-LIKE 248 815 - -
Lja2g3063 815 SMART 26again6 771 798 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3063 Lja-Chr2 62926777 62931582 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja2g3063 MULE 2.7e-22 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3063 K17604 - gmx:102659753 1230.7