LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja2g3056	ATGCCGAGCGTCGCCGTTAAGCTCTATAGCGTGTTCTTCAAGTTTCTCTTGAAGAACCGTTTACAGAACCGGATCCAAGACCCGCCTGAAAAATCCGACCCGTTTGGCGTCACTACCCGACCCGACGAATCCATCGCCGCTCCTAACCCTTCTTTCACCGACGGCGTCGCCACCAAAGACATTCACATTGACCCCTTCACTTCCCTCTCTATCCGAATCTTCCTTCCCGAATCCGCACTCGCCTCGCCCGAACGGCGGAACAGTTACGGCCCTCCGGGGACACCGGCGACGGAGGATCCGAGGAGGAAAAGCGTAAGCGACACCGGCAGCGAGGGGTACCGAGGCTATGCGCCGGCGGTGGATGATCGCCGGAGGAAACTGCCGGTGATGTTGCAGTTTCACGGCGGTGGTTGGGTGAGCGGGAGCAACGACTCGGTGGCGAACGACTTATTCTGCCGACGGATGGCCAAGCTCTGCGATGCGGTGGTTGTTGCGGTCGGGTATCGGTTGGCGCCGGAGAATCGGTACCCGGCGGCGTTTGAGGATGGGTTGAAGGTGCTGCATTGGCTGGCGAAGCAGGCGAATTTGGCGGATTGTAGGAAGTCTTTGGGGGTCAAGAAATCGTTGGATGGTGGTCATAGGCATATTGTTGATTCGTTCGGAGCTTCTGTGGTTGAGCCATGGTTGGCTGCTCATGGTAATCCATCAAGGTGTGTTCTTCTTGGTGTGAGTTGTGGAGCAAATATTGCAGATTATGTGGCTCGAAAAGCTGTAGAAGCTGGAAAACTTCTGGACCCTGTCAAGGTGGTAGCACAGGTCCTGATGTATCCATTTTTTTGTTGGAACTCATGGAAACTATTCCTACCTGAGGAAGAATTTAGCCTGGACCATCCAGCCGCCAATCCCCTAGTTCCAGGCCTCCTTCCTCCTTTAAAGCTAATGCCTCCAACACTGACGGTGGTTGCCGAACTTGATTGGATGAGGGACCGTGCCATTGCTTACTCAGAGGAGCTTAGGAAGGTGAATGTTGATGCACCTGTTCTTGAGTATAAGGACGCAGTCCATGAATTTGCAACACTTGACATGCTTCTCAGAACCCCACAGGTGCAGGTTTGTGCAGAGGATATTGCCATCTGGGTCAAGAAATATATTTCATTTCGAGGTCATGAATTCTCATATTGA	1182	0.5313	MPSVAVKLYSVFFKFLLKNRLQNRIQDPPEKSDPFGVTTRPDESIAAPNPSFTDGVATKDIHIDPFTSLSIRIFLPESALASPERRNSYGPPGTPATEDPRRKSVSDTGSEGYRGYAPAVDDRRRKLPVMLQFHGGGWVSGSNDSVANDLFCRRMAKLCDAVVVAVGYRLAPENRYPAAFEDGLKVLHWLAKQANLADCRKSLGVKKSLDGGHRHIVDSFGASVVEPWLAAHGNPSRCVLLGVSCGANIADYVARKAVEAGKLLDPVKVVAQVLMYPFFCWNSWKLFLPEEEFSLDHPAANPLVPGLLPPLKLMPPTLTVVAELDWMRDRAIAYSEELRKVNVDAPVLEYKDAVHEFATLDMLLRTPQVQVCAEDIAIWVKKYISFRGHEFSY*	394

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lja2g3056	393	Pfam	alpha/beta hydrolase fold	284	358	IPR013094	GO:0016787
Lja2g3056	393	Pfam	alpha/beta hydrolase fold	130	278	IPR013094	GO:0016787
Lja2g3056	393	PANTHER	CARBOXYLESTERASE 16-RELATED	282	373	-	-
Lja2g3056	393	PANTHER	CARBOXYLESTERASE 16-RELATED	105	280	-	-
Lja2g3056	393	PANTHER	ARYLACETAMIDE DEACETYLASE	22	92	-	-
Lja2g3056	393	PANTHER	ARYLACETAMIDE DEACETYLASE	282	373	-	-
Lja2g3056	393	PANTHER	ARYLACETAMIDE DEACETYLASE	105	280	-	-
Lja2g3056	393	MobiDBLite	consensus disorder prediction	25	51	-	-
Lja2g3056	393	SUPERFAMILY	alpha/beta-Hydrolases	29	384	IPR029058	-
Lja2g3056	393	PANTHER	CARBOXYLESTERASE 16-RELATED	22	92	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja2g3056	Lja-Chr2	62851749	62855201	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja2g3056	1	393	Carbohydrate Esterase	AT3G27320	71.494	0.0	600

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja2g3056	-		-	gmx:100809142	605.134

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja2g3056	2	62851749	62855201	Lja2g3056	2	62851749	62855201	ECH

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