Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3038 ATGGCTGGAGGAGTTATGCTACAGTTATTGAGGAGGAAACTCCAGCCTCATTCTCTGAATCCTTCTATGTCATCTGGTTCTGGCTCTGCTGGCAGCAGCTCCTTAAGAGCTCTTGCGCTAATTGGAGCTGGCATCTCAGGTTTTTTGGGTTTTGCAACAACTGCATCAGCTGATGAAGCAGAGCATGGCCTGTCATGTCCAAGCTATCCATGGCCTCACGAGGGCATCCTCAGTTCATATGATCATGCTTCGATACGTCGTGGTCATCAAGTTTATCAACAAGTCTGTGCTTCCTGTCATTCTATGTCTTTGATATCATACCGTGATTTGGTTGGTGTTGCATATACAGAAGAAGAGGTCAAGGCTATGGCAGCTGAGATTGAGGTGGTTGATGGGCCTAATGATGAGGGGGAGATGTTTTCACGCCCCGGTAAACTCAGTGATCGCTTTCCGGAGCCTTATGCAAATGAATCAGCTGCTAGGTTTGCCAATGGAGGAGCCTACCCTCCAGATCTAAGTCTTATTACCAAAGCTCGTCACAATGGTCAGAACTATGTATTCTCCCTTCTAACCGGCTATCGTGAACCCCCTGCTGGTATCGTGATCAGAGAAGGACTGCACTATAATCCTTATTTTCCTGGTGGGGCCATTGCCATGCCTAAGATGCTTAATGATGGCGCTGTTGAATATGAAGATGGAACCCCTGCTACAGAATCTCAGATGGGGAAAGATGTTGTGTCATTTTTGTCATGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAACTGATGGGATTTAAGTGGATATTTGTACTATCACTGGCATTACTTCAAGCTGCCTATTATCGTCGCCTTCGGTGGTCTGTTCTCAAGTCTCGCAAGCTGGTTCTTGATGTTGTCAATTAG 903 0.4662 MAGGVMLQLLRRKLQPHSLNPSMSSGSGSAGSSSLRALALIGAGISGFLGFATTASADEAEHGLSCPSYPWPHEGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEEEVKAMAAEIEVVDGPNDEGEMFSRPGKLSDRFPEPYANESAARFANGGAYPPDLSLITKARHNGQNYVFSLLTGYREPPAGIVIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATESQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3038 300 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 255 299 IPR021157 -
Lja2g3038 300 Gene3D - 256 299 - -
Lja2g3038 300 Gene3D - 60 255 IPR036909 GO:0009055|GO:0020037
Lja2g3038 300 PRINTS Cytochrome C1 signature 89 108 IPR002326 GO:0009055|GO:0020037
Lja2g3038 300 PRINTS Cytochrome C1 signature 236 255 IPR002326 GO:0009055|GO:0020037
Lja2g3038 300 PRINTS Cytochrome C1 signature 134 154 IPR002326 GO:0009055|GO:0020037
Lja2g3038 300 PRINTS Cytochrome C1 signature 255 270 IPR002326 GO:0009055|GO:0020037
Lja2g3038 300 PRINTS Cytochrome C1 signature 69 88 IPR002326 GO:0009055|GO:0020037
Lja2g3038 300 PRINTS Cytochrome C1 signature 205 216 IPR002326 GO:0009055|GO:0020037
Lja2g3038 300 PRINTS Cytochrome C1 signature 216 235 IPR002326 GO:0009055|GO:0020037
Lja2g3038 300 PRINTS Cytochrome C1 signature 167 191 IPR002326 GO:0009055|GO:0020037
Lja2g3038 300 PANTHER CYTOCHROME C1-1, HEME PROTEIN, MITOCHONDRIAL 25 300 - -
Lja2g3038 300 Pfam Cytochrome C1 family 71 287 IPR002326 GO:0009055|GO:0020037
Lja2g3038 300 SUPERFAMILY Cytochrome c 64 254 IPR036909 GO:0009055|GO:0020037
Lja2g3038 300 ProSiteProfiles Cytochrome c family profile. 83 190 IPR009056 GO:0009055|GO:0020037
Lja2g3038 300 PANTHER CYTOCHROME C1 25 300 IPR002326 GO:0009055|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3038 Lja-Chr2 61724829 61734047 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3038 1 300 Chloroplast and Mitochondria Gene Families AT3G27240 84.314 4.61e-177 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3038 K00413 - gmx:100803087 523.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g3038 2 61724829 61734047 Lja2g3038 2 61724829 61734047 ECH