Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3030 ATGATGAAGGCTTTCTCCTCATTTCAACCGCCCCAGCATTTCCCTTGCACAAGATTTTTCTCTTCCATTACCACTAGCAGGACTCAACTTTCTTTTCATGCAAAGGCTTTCTATTGCCAGGCAAAATCTGGCATAGATGGGTCATTGAATTTGAGAGTGATGCCACCCACCCTGTTAGCAGCAGAAAAGGAAGAAGCCAAGGCTGTGTTGTGCTTGTTTTTCAAGAAACAAGGTTTGAGCAACGCGGTTGCAGCAAGAACCATCAACAAGTCAGATCTTTTTATTGATCATCTTGTCTCAAAGCTTCACTCCAAGCACAAATCTCGATACCTTGCAGGGAGAGAGCTTACAACTCTAGAGATCAGAGATGCTCTTATTCCTTATCTTGAATCCCTTTTGGAAGAGCATGGCGACGTTCTGGGGGATTTAGTGGAAAGCTATCCAAACCCACCCGTGAAAGAAAAATCGACTTTGGCAATTCCTACTACTAGTAACGTGGTAGACTCTAAGAAGCTCAAAGCTGTGTCTCGAGTCGATGAGATAGACCCAGCTGCCGGCAAGCTTCGCCCTCATATTGTGTATCTCATGGAGCTTGGAATGGATATTGAGCAGGTTAGGAGTATTATACGACGATTCCCAGCTTTTGCCTACTATAGCTTGGAAGGTAAAATTAAGCCAGTGGTTGAGTTTTTCCTTGAACTTGGAGTTCCAAAAGAAAACATTGCCACCATCCTCACTAAAAGGCCTCAATTGTGTGGAATCAGTCTATCTGAAAATCTTAAACCAACCATGAAGTTCTTAGAGTCTTTCGGTATTGACAAGAAACAATGGCCGAAAGTGATATACCGCTTCCCGGCCCTGCTAACTTATAGCAGGCAGAAGGTGAGGGAAAGTGTGGATTTTCTCTATGAATTTGGCCTCTCAGAAGAGAGTATAGGTAAGATCTTAACTCGCTGCCCCAATATTATTAGTTACAGTGTAGAGGACAATCTCCGACCCACAGCTAAGTACTTCCGCTCTTTGGGGGTTGATGTTGGCATTCTCCTATTCAGGTGCCCACAAAATTTTGGTCTGAGCATTGAGGCCAATATAAAGCCTGTAACAGAATTTTTCTTGGAGCAGGGATACACTTTGGAAGAAATTGGGACTATGATTTCAAGATATGGAGCTCTGTATACTTTCAGCTTGACTGAGAATTTGATGCCAAAATGGGAATTCTTTATGACTATGGATTACCCGAAATCTGAGCTGGTTAAATTTCCTCAGTTTTTTGGGTACAGTCTAGAGCAGAGGATTAAACCAAGATATGCTCGAGTGAAAAAATCTGGAGTGAGGTTACTGCTGAACCAGATTCTTTCACTGTCAAGCAGCAATTTTGAGAAGGCCTTGAAAAAGAAAATGGAGAAAATGCAAGCTGGTTAA 1422 0.4255 MMKAFSSFQPPQHFPCTRFFSSITTSRTQLSFHAKAFYCQAKSGIDGSLNLRVMPPTLLAAEKEEAKAVLCLFFKKQGLSNAVAARTINKSDLFIDHLVSKLHSKHKSRYLAGRELTTLEIRDALIPYLESLLEEHGDVLGDLVESYPNPPVKEKSTLAIPTTSNVVDSKKLKAVSRVDEIDPAAGKLRPHIVYLMELGMDIEQVRSIIRRFPAFAYYSLEGKIKPVVEFFLELGVPKENIATILTKRPQLCGISLSENLKPTMKFLESFGIDKKQWPKVIYRFPALLTYSRQKVRESVDFLYEFGLSEESIGKILTRCPNIISYSVEDNLRPTAKYFRSLGVDVGILLFRCPQNFGLSIEANIKPVTEFFLEQGYTLEEIGTMISRYGALYTFSLTENLMPKWEFFMTMDYPKSELVKFPQFFGYSLEQRIKPRYARVKKSGVRLLLNQILSLSSSNFEKALKKKMEKMQAG* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3030 473 Pfam mTERF 149 303 IPR003690 GO:0003690|GO:0006355
Lja2g3030 473 Pfam mTERF 194 373 IPR003690 GO:0003690|GO:0006355
Lja2g3030 473 Pfam mTERF 301 460 IPR003690 GO:0003690|GO:0006355
Lja2g3030 473 Gene3D Transcription termination factor 3, mitochondrial 249 470 IPR038538 -
Lja2g3030 473 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF5, CHLOROPLASTIC 26 471 - -
Lja2g3030 473 PANTHER CGI-12 PROTEIN-RELATED 26 471 IPR003690 GO:0003690|GO:0006355
Lja2g3030 473 SMART mt_12 278 308 IPR003690 GO:0003690|GO:0006355
Lja2g3030 473 SMART mt_12 346 377 IPR003690 GO:0003690|GO:0006355
Lja2g3030 473 SMART mt_12 313 344 IPR003690 GO:0003690|GO:0006355
Lja2g3030 473 SMART mt_12 206 237 IPR003690 GO:0003690|GO:0006355
Lja2g3030 473 SMART mt_12 414 445 IPR003690 GO:0003690|GO:0006355
Lja2g3030 473 SMART mt_12 242 273 IPR003690 GO:0003690|GO:0006355
Lja2g3030 473 SMART mt_12 382 413 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3030 Lja-Chr2 61335133 61338235 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lja2g3030 mTERF 1.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3030 K15032 K12177 gmx:100781900 755.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g3030 2 61335133 61338235 Lja2g3030 2 61335133 61338235 ECH