Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3001 ATGGATCATTACAAGGTTCTAGGTTTGCACAGAACCGCAACCAAGGAGGAAATCAAAGCGGCGTTCAAGAAACTGGCGTTTCAATTCCACCCCGACAAGCATTCCCAATCGCCCAAGCCTGTCAGGGACAGTGCCACCCTTCGATTCAAGCAGGTCTCTGAGGCTTACGATGTCCTCATGGACGATCGCAAGCGCGCCGACTACAACTCGCGGTGGCGCTCCGCCGCCGGCAGCAGCAGCAGCAACCATTATTATTCTCAGTATAGCTACGGACACGCTAGGAACGAGACCAACTACGATTATTATAAACCAAGGTCCGGGTTCAATGCTGGTGGCTTCGCATCCAAGTTTGAACTCGCTATCCGGATTTTGACGGCGCGATCTTCTCTTCTCAGTCTTGGCTTCGCAGCAGCTATATTAGGTGGGATAGTTGTCATTGATACAAGTGGAGACTCTTTATGGAAGATGCAAAATTCTGGGAAATCGTTTGAAGAAGCAATGGAGTCAATTGAGAAAGCCAAAGCATATAGAGAAGATAACATGAACGAACGTCCTTGA 558 0.4892 MDHYKVLGLHRTATKEEIKAAFKKLAFQFHPDKHSQSPKPVRDSATLRFKQVSEAYDVLMDDRKRADYNSRWRSAAGSSSSNHYYSQYSYGHARNETNYDYYKPRSGFNAGGFASKFELAIRILTARSSLLSLGFAAAILGGIVVIDTSGDSLWKMQNSGKSFEEAMESIEKAKAYREDNMNERP* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3001 185 SUPERFAMILY Chaperone J-domain 1 72 IPR036869 -
Lja2g3001 185 CDD DnaJ 2 61 IPR001623 -
Lja2g3001 185 Pfam DnaJ domain 2 69 IPR001623 -
Lja2g3001 185 ProSiteProfiles dnaJ domain profile. 2 72 IPR001623 -
Lja2g3001 185 PANTHER CO-CHAPERONE PROTEIN DJLA 1 168 - -
Lja2g3001 185 Gene3D DnaJ domain 1 93 IPR036869 -
Lja2g3001 185 PANTHER CHAPERONE PROTEIN DNAJ 72 1 168 - -
Lja2g3001 185 SMART dnaj_3 1 64 IPR001623 -
Lja2g3001 185 ProSitePatterns Nt-dnaJ domain signature. 49 68 IPR018253 -
Lja2g3001 185 PRINTS DnaJ domain signature 4 22 IPR001623 -
Lja2g3001 185 PRINTS DnaJ domain signature 22 37 IPR001623 -
Lja2g3001 185 PRINTS DnaJ domain signature 44 64 IPR001623 -
Lja2g3001 185 PRINTS DnaJ domain signature 64 83 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3001 Lja-Chr2 59528740 59534483 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3001 3 70 C2H2 Transcription Factor Family AT1G74250 38.235 2.10e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3001 - - gmx:100782769 283.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g3001 2 59528740 59534483 Lja2g3001 2 59528740 59534483 ECH