Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3000 ATGGGAAGCAGGAAGGAAGAAGAGAAGAATGAGAAAATTATAAGGGGTCTCATGAAGCTTCCGCCAAATCGAAGATGTATCAACTGTGATAATTTGGGACCACAATATGTATGCACAAATTTTTGGACCTTCATTTGCACGACATGCAGTGGAATACATCGTGAGTTTACACATCGTGTGAAGTCTGTATCGATGGCAAAGTTCACTTCACAAGAAGTTGATGCTCTTCAAAATGGGGGTAACCAGCGCGCAAGGGAAATATATTTGATTAATTGGGACTTCCAAAGACAGCGGTTGCCAAATAGCAGTAACATTGATAAGATAAGGGAGTTTATCAGGAATGTATACGTTGATAGAAGATATGCTGGAGCAAAGTCTACTGATAAGCCTCCAAGAGATGCGCAGAGCCCTGGAATTCATGAAGATGAGATTAGGCGTGCCAGCTCTTATCATTCATATTCTCAAAGTCCTCCGTATGATCATCAATATGAGGATCGGCGTTATGGGAAACAAGCAGCTTCCCTAACCAGGAAGCCTGGTTCAGATAAAGTTCGTTATGAAGGAAAGATGTCTGGCATTATCTATAGTCCTGGCCGCTTTAGTGATCATGCTCCTGCATATGACAGATTTGCAAATGAGGGATCTGGTCCCAGAATTTCTGACTTTTCTGTGGGTGAGCAAATGAAATCAGATGTTCAGTCTCCTAAGTTTCATAAGGACATTGCGTTTAGCCGTCCATCCTATCCACGCTCTGGTTCCAGCTCAAGTGAAGATGTATGGTCGCAAGCAAGAAATACAACTCTGGAAACTAATGCCAGTGTCAAGAGAGATGCAGATGGAATTCAACGTCCACAGAGAACTACATCACTGCAACCAACAGACAGCAACTTTTCATCCTTAAGATCTTACAGTTCTGGTGGTATAGTTGATTTTTTTTCAGAACCTGTCCAATCTTCAGCATCCCTTCAAGATAAAGCGTTGGGTATTCCACGGCCATCTGGTCCTACAAGATCTGTTAGCTTGGATCTTTCCAAGGCACCTCCGGCATCAGCTTCACCTGTTGATCTTTTTCAGCTACCAGCAGCACCATCTCAAGCTCCACTGGAGCATTTGTTTCAATTATCTGATATGTCAGAAGCTCCATCTTTTAATGGGAATCAACCTACACAAACATCCCAACTCACATCGATTGACTTATTTGTGGATCTTCCTCATCAGCCACATACTGCAACCTCAGATGAAAAATCACTGGAGTTACCTGTCCCTAAAAATGAAGGGTGGGCAACATTTGATATGCCTCAGTGCACATCATCTACTGCACAAATGGAAATTCCAGCTGCTGTACCTCCAAGTGCACCTTTGCAGGATAGATTTGATCCATTTTCAACCTTACATGCGAATATGCAATGGCCATCTTTTGAAATTCCTAGTGTCAGTGCACCTTCTTCTGTTAATTCTAATATATGGCACGATGGTTTTGGGCAAGGAGAACAAGTTTCTGTTATGGCAACAAACACTCAACCATGGAATGCATTTGAAGATTCTGGTACCCATCTTCATGTGGATTCAGTTAGTCAAGAATTAAAATTGCACAATTTCCCTTCTGCTGATAATCAAATTTTGGGTTTAAGGGCTTCTGAGAACCAGGTACCAAATAACGATGGAATGCAAGGAATTGCTCCTATTGATGGATTAGATAATCATGTCATCCCATCACATAGCGATAATCTAGGTATCAATCGTAAATCAACTAATCCATTTGACTATCCCTTTGATTCTGATGCAGATCACAACAATATGTTCCTTGATATGAGCTCTTTGCAAGCTGCTCTGCCAGATACTCTGTTGCCTGCCACCTTTCATGGTGGTATAGCTGAACCTTGGCTCCCTCAAAATACAGTGGCCCCATATATTTCCACTGCCGGAGAAGGTGGTTTGTCATTCATGGCTGTGCAAACACCAAGTTCGCAATTACAGAACATCCAGACACAGGAACCAATTGCTTCGATTGGGGGAAATCCTTTTGCATAG 2031 0.4225 MGSRKEEEKNEKIIRGLMKLPPNRRCINCDNLGPQYVCTNFWTFICTTCSGIHREFTHRVKSVSMAKFTSQEVDALQNGGNQRAREIYLINWDFQRQRLPNSSNIDKIREFIRNVYVDRRYAGAKSTDKPPRDAQSPGIHEDEIRRASSYHSYSQSPPYDHQYEDRRYGKQAASLTRKPGSDKVRYEGKMSGIIYSPGRFSDHAPAYDRFANEGSGPRISDFSVGEQMKSDVQSPKFHKDIAFSRPSYPRSGSSSSEDVWSQARNTTLETNASVKRDADGIQRPQRTTSLQPTDSNFSSLRSYSSGGIVDFFSEPVQSSASLQDKALGIPRPSGPTRSVSLDLSKAPPASASPVDLFQLPAAPSQAPLEHLFQLSDMSEAPSFNGNQPTQTSQLTSIDLFVDLPHQPHTATSDEKSLELPVPKNEGWATFDMPQCTSSTAQMEIPAAVPPSAPLQDRFDPFSTLHANMQWPSFEIPSVSAPSSVNSNIWHDGFGQGEQVSVMATNTQPWNAFEDSGTHLHVDSVSQELKLHNFPSADNQILGLRASENQVPNNDGMQGIAPIDGLDNHVIPSHSDNLGINRKSTNPFDYPFDSDADHNNMFLDMSSLQAALPDTLLPATFHGGIAEPWLPQNTVAPYISTAGEGGLSFMAVQTPSSQLQNIQTQEPIASIGGNPFA* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3000 676 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Lja2g3000 676 MobiDBLite consensus disorder prediction 283 298 - -
Lja2g3000 676 MobiDBLite consensus disorder prediction 233 298 - -
Lja2g3000 676 SUPERFAMILY ArfGap/RecO-like zinc finger 10 122 IPR037278 -
Lja2g3000 676 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Lja2g3000 676 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Lja2g3000 676 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Lja2g3000 676 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Lja2g3000 676 MobiDBLite consensus disorder prediction 247 273 - -
Lja2g3000 676 Gene3D Arf GTPase activating protein 2 132 IPR038508 -
Lja2g3000 676 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD14-RELATED 1 676 - -
Lja2g3000 676 Pfam Putative GTPase activating protein for Arf 12 122 IPR001164 GO:0005096
Lja2g3000 676 CDD ArfGap_AGFG 11 121 - -
Lja2g3000 676 MobiDBLite consensus disorder prediction 325 349 - -
Lja2g3000 676 MobiDBLite consensus disorder prediction 144 184 - -
Lja2g3000 676 PANTHER ARFGAP/RECO-RELATED 1 676 IPR044820 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3000 Lja-Chr2 59231101 59243045 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3000 14 88 C2H2 Transcription Factor Family AT4G05330 39.241 4.42e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3000 K15044 - gmx:100794964 977.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g3000 2 59231101 59243045 Lja2g3000 2 59231101 59243045 ECH