Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2996 ATGGCTTCATCACCACACTTCAACAATGCTGGTTATGGTTCCTCTATGGACATGGATTTTCCCCCTTCCGATCCTGTTCCTATCGATCAAGGGGATGATGAAGTTGAAGCCAACGATTCTTCGGCGTTTGGAAAAAATGGGCCCACCAAGCTTTGTGTTAGAGGTCACTGGAGAGCCGCTGAAGATGCCAAGCTTAAAGAGCTTGTTGCTCAATTTGGTCCTCGAAACTGGAACTCCATCGCAGAACATCTCGAAGGAAGAACAGGAAAAAGTTGCAGATTGAGGTGGTTTAATCAGCTAGATCCTAAAATTAACAGATCGGCATTCACTGTGGAAGAAGAGGAGAGGCTCTTGGCTGCTCATAAAATGTACGGCACCAAATGGGCTATGATTTCAAGACTCTTCCCTGGCAGAACAGACAATGCAGTGAAGAACCATTGGCATGTGATGATGGCTAGGAGGCAAAGGGAGCAGCAGCACAGAAGGAGAAAGCCCACATTTCAAAACCCTGATGCAAAGGTGTTAAATCTTCTTTTGTCAAAGAATGCTGCAGCCAGTGAATCAACTATTTCAAGCACCATTGATGAATCTGCCTCAGCATGCACCAACCTCTCCCTCACTCCCTCTTCGTTCAGATCTATTCCCAGGCATTTTCATAACCAGAACACTTTTCAAGCCTATGGATCACTAATCGGTCTATATGGAGAAAGCAATGTCCCAGTGGGGGATGTGGGTTGTGACAAGTTTTTCAGCGCTTGGAACGGTTCATCAGATCGTGGTAACGTGGGAAAGCTGATGGGTGTCGATCAATCCAACTGCTCAGTTTCAAACTCAGAAGTTTCAGTGTCTGAGTCGGTTGCCACCAACAAGACCAGTACATCAATTTTTGGTCAAAATGAGGATGTGGGGAATAAGATTAACATGCCATTTATTGACTTTCTTGGAGTAGGAGCTACATAG 960 0.4531 MASSPHFNNAGYGSSMDMDFPPSDPVPIDQGDDEVEANDSSAFGKNGPTKLCVRGHWRAAEDAKLKELVAQFGPRNWNSIAEHLEGRTGKSCRLRWFNQLDPKINRSAFTVEEEERLLAAHKMYGTKWAMISRLFPGRTDNAVKNHWHVMMARRQREQQHRRRKPTFQNPDAKVLNLLLSKNAAASESTISSTIDESASACTNLSLTPSSFRSIPRHFHNQNTFQAYGSLIGLYGESNVPVGDVGCDKFFSAWNGSSDRGNVGKLMGVDQSNCSVSNSEVSVSESVATNKTSTSIFGQNEDVGNKINMPFIDFLGVGAT* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2996 319 PANTHER MYB PROTEIN-RELATED 34 319 - -
Lja2g2996 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 49 100 IPR017930 -
Lja2g2996 319 ProSiteProfiles Myb-like domain profile. 101 151 IPR001005 -
Lja2g2996 319 CDD SANT 57 98 IPR001005 -
Lja2g2996 319 Pfam Myb-like DNA-binding domain 54 100 IPR001005 -
Lja2g2996 319 Pfam Myb-like DNA-binding domain 106 149 IPR001005 -
Lja2g2996 319 CDD SANT 108 151 IPR001005 -
Lja2g2996 319 MobiDBLite consensus disorder prediction 1 43 - -
Lja2g2996 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 155 IPR017930 -
Lja2g2996 319 Gene3D - 53 105 - -
Lja2g2996 319 Gene3D - 107 169 - -
Lja2g2996 319 ProSiteProfiles Myb-like domain profile. 54 100 IPR001005 -
Lja2g2996 319 SUPERFAMILY Homeodomain-like 53 147 IPR009057 -
Lja2g2996 319 PANTHER OS08G0435700 PROTEIN 34 319 - -
Lja2g2996 319 SMART sant 105 153 IPR001005 -
Lja2g2996 319 SMART sant 53 102 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2996 Lja-Chr2 58578945 58580582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2996 44 319 MYB Transcription Factor Family AT5G17800 45.918 2.28e-67 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja2g2996 Myb_DNA-binding 8.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2996 K09422 - jre:109000849 327.405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2996 2 58578945 58580582 Lja2g2996 2 58578945 58580582 ECH