Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2990 ATGGTGTTTTGTGATCACTGTGCGAAAAACGTTCCCGGAGTGCGAGTCTCTGATGGTCCCCTATGTTGTAACGAATGTGGGAAGGTACTGGAGGAATTCTATTTCTCTGAGGAACCTACCTTTGAAAAGACTTCGGACGGGCAGAGCAAATTATCAGGCCGTTATGTAAGAACAATCCAAAGTGAGTACTCTGCCTCACGTCAAAGGACTTTAGACAGAGCTTACGATGAGATCAAATATCTGAGTTACAACCTTGGAGTGGATGATGATAATGTGGCCAACCAAGCTTTGGCCTTCTATAGAATAGGACTTGAGAAAAATTTCACCAAAGGACGTAAATCAGAACAAGTACAGGCAGCTTGCCTCTATATTGCGTTCCGGGAAAATAATAAGCCATACCTTCTTATTGATTTTTCAAATTATTTGAGGACAAATGTTTATGTCCTAGGTGCAGTTTTTTTGCAGCTTTGTAAATTATTAAGGCTTGAAGAGCACCCAATTGTTCAAAAGCCTGTGGATCCCAGTCTTTTTATTTATAAATATACGATTAGTTTGTTGAACCATAGGAATATTCATGTCTCTGAAACTGCACTCAATATTATTGCCAGCATGAAACGTGACTGGATGCAGACAGGGAGGAAGCCAAGCGGATTATGTGGTGCAGCATTGTACGTGTCTGCTCTTGCACATGGTTGTAAAAAATCTAAGTCAGAGATTCAAAGAATTGTCCATGTATGTGAAGCAACATTGACTAAGCGGTTGGTAGAATTTGAAAATACAGAATCTGCGAGCTTGACAATTGAGGAGTTGAATACGATGGCAAAGGAGCTCGAAAAAAATCCTATTCAAATACCAAATGGTAAACTGAGCAAATGTACTTCAAAGGATCTACTATGTGAACACAAGGCTAGTGATGCGGCCTATTTTGCTCTTGGGTTATGTGAAACATGTTACAAGGATTTTGATAAACTCTCTGGTGGACTTAGTGGTGGTTTGGATCCTCCTGCATTCCAGCGTTCTGAGAGGGAGAGAGTAGCAAAATTACATTCTGAGGAAAGCGCGAATAAATCTGATGATTTGGTGAGAGCAACAAATGGTGCATGTGAGAGCCGACAAGACAAAATACATGTCTCTCAGCCTGAAAGTATTGGGGCTAATGAACAATTGGCCACTGAAAATGGTGAGCATGATGAGTCACATAGAGAAGATGATATGAATGCGAAAACTGCCGATGAATCAGAAAGTCTTTCAGATATTGATGATCTGGAGGTCGATGGCTACCTTCACAGTGAGCAGGAAAAGCATTTTAAGAAAATTATTTGGGAAAAGATGAATCGAGAATATCTAGAGGAACAAGCAGCAAAGGAAGCAGCTGCAGCAGCTGCTAAGAAAGCTTTTGAGGCGAATTTCAAAAACTGTTCTGAGGATTTGCTTGCAGCGAGAGAGTTTGCTGCATCTACTGCTGCATCTGTGGCAAAATCGAGAAAGGAAATGAAACAGAAACGAGCCGAAGAGGCAAAAAACTTGGGTCCTCCTCAATCTGCGGCAGAGGCCGCTAAGCAAATGTTGAGAACAAAGAGGCTCAGTTCCAAAGTCAATTATGATCGTGTGCAATCATTATTTGATGAACCTGTGGCTCCAGAGAATCCCAAGAAAGTACGATTTGAGATACCCTCTGATAATCATGATTACTTGAAGTCGAAGTTTGAGGACAAGATTCAAGATGATGAACTGGGATCAGTGGACGGGTTTGAGGATGGCGATATGCACGATATGCACGAAGATTATTATGGAAATGCCGACGAGGCATATGACTATGAGGATGATGGGTACAACTTTGATTATTAG 1848 0.4129 MVFCDHCAKNVPGVRVSDGPLCCNECGKVLEEFYFSEEPTFEKTSDGQSKLSGRYVRTIQSEYSASRQRTLDRAYDEIKYLSYNLGVDDDNVANQALAFYRIGLEKNFTKGRKSEQVQAACLYIAFRENNKPYLLIDFSNYLRTNVYVLGAVFLQLCKLLRLEEHPIVQKPVDPSLFIYKYTISLLNHRNIHVSETALNIIASMKRDWMQTGRKPSGLCGAALYVSALAHGCKKSKSEIQRIVHVCEATLTKRLVEFENTESASLTIEELNTMAKELEKNPIQIPNGKLSKCTSKDLLCEHKASDAAYFALGLCETCYKDFDKLSGGLSGGLDPPAFQRSERERVAKLHSEESANKSDDLVRATNGACESRQDKIHVSQPESIGANEQLATENGEHDESHREDDMNAKTADESESLSDIDDLEVDGYLHSEQEKHFKKIIWEKMNREYLEEQAAKEAAAAAAKKAFEANFKNCSEDLLAAREFAASTAASVAKSRKEMKQKRAEEAKNLGPPQSAAEAAKQMLRTKRLSSKVNYDRVQSLFDEPVAPENPKKVRFEIPSDNHDYLKSKFEDKIQDDELGSVDGFEDGDMHDMHEDYYGNADEAYDYEDDGYNFDY* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2990 615 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Lja2g2990 615 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Lja2g2990 615 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Lja2g2990 615 SUPERFAMILY Cyclin-like 172 269 IPR036915 -
Lja2g2990 615 SUPERFAMILY Cyclin-like 74 163 IPR036915 -
Lja2g2990 615 MobiDBLite consensus disorder prediction 391 415 - -
Lja2g2990 615 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 1 545 IPR000812 GO:0006352|GO:0070897
Lja2g2990 615 MobiDBLite consensus disorder prediction 494 520 - -
Lja2g2990 615 Gene3D Single helix bin 408 459 - -
Lja2g2990 615 SMART cyclin_7 76 158 IPR013763 -
Lja2g2990 615 SMART cyclin_7 176 279 IPR013763 -
Lja2g2990 615 Gene3D - 63 165 - -
Lja2g2990 615 Pfam Transcription factor TFIIB repeat 190 259 IPR013150 GO:0017025
Lja2g2990 615 Pfam Transcription factor TFIIB repeat 68 157 IPR013150 GO:0017025
Lja2g2990 615 MobiDBLite consensus disorder prediction 342 358 - -
Lja2g2990 615 CDD CYCLIN 173 248 IPR013763 -
Lja2g2990 615 Coils Coil 260 280 - -
Lja2g2990 615 Gene3D - 173 265 - -
Lja2g2990 615 Pfam Brf1-like TBP-binding domain 417 542 IPR011665 -
Lja2g2990 615 MobiDBLite consensus disorder prediction 342 418 - -
Lja2g2990 615 PANTHER TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT 1 545 IPR029529 GO:0000126|GO:0000995|GO:0006383
Lja2g2990 615 SUPERFAMILY Zinc beta-ribbon 2 47 - -
Lja2g2990 615 CDD CYCLIN 74 143 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2990 Lja-Chr2 57184536 57206616 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2990 1 526 Inorganic Solute Cotransporters AT2G01280 42.402 7.34e-111 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2990 K15196 - gmx:100817609 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2990 2 57184536 57206616 Lja2g2990 2 57184536 57206616 ECH