Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2988 ATGGATAGGCAAAGAGCCCACAGAAGCCTAACCCGCACTAACTGTCAAGCAAGACTCAGGATACGGTACGATAACAAGAAATGCCAATGGGGTGTGGTGGGGTTTGAGGAGAAACACAACCACGAACTTACCCCGTCGGTATATGTCCCTAGAATAATTAGTCTTATAGACTTCATGCAAACCATTGAGCATGCTTTAAGAGGGTACAGATTTAATGAGTTGCGAGCTGATTACGGTAGTATTTACACTGAACCTGTTTTGACTACCACTCTGTACAAATTTGAAAGTGAAGCTGCAAAACTCTACACGTGTGAAATTTTTAAAGAAGTAAGAAATCAAATTGAGCGTGTGGCTCCATTGAATTATAAAGATAAAACAGCGGATGGAGATGAAGTGAGGTACGAAATGTTCCATTATAGGAGGCCAGAAAGAACCATTGAAGTAGTCTACAACAAGAAAAGTAATCAATTTTACTGTCCATGCCGGCTATTTGAATCACGTGGAATACCATGTTCACATATTTTCAACAGCATGAAATATGAGCTCATGGAAACCATTCCTAAAACACTTATGCTTAGCAGGTGGGGACGGTATGCAAAATCTGAATACTTGTCGGCAACATCCACCGATGAGGTGGACAGTTCTATACTCAAACAAGGCGGACATGTCAACGGGACCAACGACATTCGTGATCCCAATATCGTCAAATCTAAAGGACGCCAACCTGCAACCCTGAAACCAAAGAAGAATAAAAAGAATAAGAAACAAGCAAGGTGTTCAAACTGTCATAAGCTTGGTCACAACGCAAGGACTTGTTCTACCCTCGTTGGTGGAGAAGATAATGATTTGGAGGGTGATGAGCGATCCACGCAGGAGGATGAGGGCAACGTAAATGACGATAGCACGGGCCAGCCAACCGAGGCCACGACGCAGCCAAGTAGATCCAATTCTAATGTTGGTCGTCGAGGACATAAAGCCAAGAAACAAAAGACAAAGAACTCGAATCTCTGTTCAGTTAATGAAAAGGAAAACCCAACCCCCGCAACTGATAAAGATGAAAGTCAGATGGGCTCACGTGCTTTATCCCCACAAAATTCAACAATGCAACCGCCAACCCAGACAGCTGCTTCTTGTGGTATAGCTCATCCCGGATTTCATTACGCTGTCCCTCAATACGGAACACGGCCACCTAACTTAGCCGTTGGTACGGGTATGCCAGCCCAGGTCAACTTCCCACATGGTTATGGTGGATGGATACCAGACCCCAACATTCAATATGCTTATGGTCAACCCATAAATGGTCCTCAAAATGCTCCTCAATGCTATGGTTATGTTCCGATATTGCCCCGAAACTATCAGAATCTATCTGCTTGTCAACCTATTCATGCTCCTGTTGTTAGAGGACATAGCCAACACCAAGGCCCCCGTAGCCAAATGCAACATGATGCGGCGAAGAAAAAGGCTGGTACATAA 1473 0.442 MDRQRAHRSLTRTNCQARLRIRYDNKKCQWGVVGFEEKHNHELTPSVYVPRIISLIDFMQTIEHALRGYRFNELRADYGSIYTEPVLTTTLYKFESEAAKLYTCEIFKEVRNQIERVAPLNYKDKTADGDEVRYEMFHYRRPERTIEVVYNKKSNQFYCPCRLFESRGIPCSHIFNSMKYELMETIPKTLMLSRWGRYAKSEYLSATSTDEVDSSILKQGGHVNGTNDIRDPNIVKSKGRQPATLKPKKNKKNKKQARCSNCHKLGHNARTCSTLVGGEDNDLEGDERSTQEDEGNVNDDSTGQPTEATTQPSRSNSNVGRRGHKAKKQKTKNSNLCSVNEKENPTPATDKDESQMGSRALSPQNSTMQPPTQTAASCGIAHPGFHYAVPQYGTRPPNLAVGTGMPAQVNFPHGYGGWIPDPNIQYAYGQPINGPQNAPQCYGYVPILPRNYQNLSACQPIHAPVVRGHSQHQGPRSQMQHDAAKKKAGT* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2988 490 Pfam FAR1 DNA-binding domain 3 44 IPR004330 -
Lja2g2988 490 MobiDBLite consensus disorder prediction 217 377 - -
Lja2g2988 490 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 6 49 IPR031052 GO:0006355
Lja2g2988 490 MobiDBLite consensus disorder prediction 296 319 - -
Lja2g2988 490 MobiDBLite consensus disorder prediction 242 261 - -
Lja2g2988 490 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 53 216 - -
Lja2g2988 490 SUPERFAMILY Retrovirus zinc finger-like domains 243 277 IPR036875 GO:0003676|GO:0008270
Lja2g2988 490 MobiDBLite consensus disorder prediction 332 376 - -
Lja2g2988 490 ProSiteProfiles Zinc finger SWIM-type profile. 144 182 IPR007527 GO:0008270
Lja2g2988 490 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 53 216 IPR031052 GO:0006355
Lja2g2988 490 MobiDBLite consensus disorder prediction 466 490 - -
Lja2g2988 490 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 6 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2988 Lja-Chr2 57077612 57080501 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja2g2988 FAR1 8.9e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2988 - - adu:107487303 178.718