Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2975 ATGGGAAATCAGAAACAGAAGTGGACGGCTGAGGAAGAAGACGCCCTCCACCGCGGCGTCCAGAAGTACGGCGCCGGCAAGTGGAAGAACATCCTCAGAGATCCCGAATTCGCTCCTTCCCTCACGAGCCGTTCCAACATCGATCTCAAGGATAAATGGAGGAATTTAAATGTTGTCACTGGACAGGGCTCCAATATAAAGTCTAGAACTCTCAAGCACAAACTACCAGCACCTACTGCAAATATTAAATCTATTCTAATATCTAAAATCTTTAGCAAATCTAATCTGAAAATATGCGCTGTATGTTCAGTCTCACATTTTTATTTCCACTCATTTCAGGCTTATACCATGGAATTGGAACAAGAAGTTACAAAGTTAAAAGAGGAGAATGAAGAACTTCAGAAAAAGCAGACATTGCATGTACTTCAATTGACCTTAACTATGGAAGTCAGGTTTCCCTAG 462 0.4177 MGNQKQKWTAEEEDALHRGVQKYGAGKWKNILRDPEFAPSLTSRSNIDLKDKWRNLNVVTGQGSNIKSRTLKHKLPAPTANIKSILISKIFSKSNLKICAVCSVSHFYFHSFQAYTMELEQEVTKLKEENEELQKKQTLHVLQLTLTMEVRFP* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2975 153 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Lja2g2975 153 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Lja2g2975 153 PANTHER SINGLE MYB HISTONE 4 1 78 IPR044597 GO:0003691
Lja2g2975 153 Gene3D - 8 88 - -
Lja2g2975 153 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 56 IPR017930 -
Lja2g2975 153 Coils Coil 112 139 - -
Lja2g2975 153 CDD SANT_TRF 6 57 - -
Lja2g2975 153 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Lja2g2975 153 SMART sant 4 59 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2975 Lja-Chr2 55045468 55051654 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2975 1 74 Single Myb Histone (SMH) Gene Family AT1G17520 73.333 3.16e-30 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja2g2975 Myb_DNA-binding 5.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2975 K09422 - pvy:116109826 119.012