Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2974 ATGGCGCAACAAGTTCTGAGAAAGGCACACAACCCCAACGATTGTTTTCCCATAGAATGCGCAGAGCTTGTCCTACCATATCTCACACCACCAGAGCTCGCCAACGTCTCTATGACCTGCAAATCCCTCCGCCAAGTCTCCCACTCCATCACTCTCCGCCGTTCCTCCGACGCTTCTAGAAGCTTCGAGAACTTTCCAGTCCCCTTTCTCAACACCACCTACCCTCCTTACGCCCACTTCATCTACACTCCTTCCCTCCTTCTCTCCTCTCAACACCTCCCTCGCCAACCGTGGGGGGGCAGGTCCGTAATTTCACCTGCTCCCGCGCTGAGTGCGGAATCGGTGAGTTTGGTGGACGAGTCGGGCCGGGTAGTGTCGGGGTGTGACTGCCGCGATGCCTGTTCGGATTGTCCGTGTTCTTGCTTGGACGGGCTTGATGTAGGCCGCGAGTGCGGACCGGGTTGCCGGTGCGGACCAGAGTGTGGGAGCCGGTCGAGCCAGAAGGGGGTTGCGGTTCGGGTGAAGATCGTGAGGGATGGGAGGAAAGGATGGGCTTTGTGTGCTGACCAATTCATTCGGAAAGGGCAGTTCGTGTTTGAGTATGCAGGTGAACTCTTGACAACCAAGGAAGCACAGAAGAGACAACAATATTATGATGAACTAGCATTGCATGGTCGTTTCTCTTCTGCTCTTTTAGTTATAAGGGAGCATCTTCCATCTGGAAACGCATGTTTGAGATTGAACATCGATGCTACTCGAATTGGAAATGTTGCGCGGTTTGTAAATCATTCATGTGATGGTGGTAATTTAAGCACAAAGCTAGTTAGAAGTTCAGGAGCTTTGTTCCCCCGCCTTTGCTTTTTTGCTTTGGAAGATATCCCAGAAGATGAAGAATTCAGTTTTAGCTATGGAGAAATCAGGAAAAGATCCAATGGATTGCCATGCTTTTGCAATAGTCCTTCTTGCTTTGGAACATTGCCCTCAGAAGATACTTAA 996 0.507 MAQQVLRKAHNPNDCFPIECAELVLPYLTPPELANVSMTCKSLRQVSHSITLRRSSDASRSFENFPVPFLNTTYPPYAHFIYTPSLLLSSQHLPRQPWGGRSVISPAPALSAESVSLVDESGRVVSGCDCRDACSDCPCSCLDGLDVGRECGPGCRCGPECGSRSSQKGVAVRVKIVRDGRKGWALCADQFIRKGQFVFEYAGELLTTKEAQKRQQYYDELALHGRFSSALLVIREHLPSGNACLRLNIDATRIGNVARFVNHSCDGGNLSTKLVRSSGALFPRLCFFALEDIPEDEEFSFSYGEIRKRSNGLPCFCNSPSCFGTLPSEDT* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2974 331 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 19 320 - -
Lja2g2974 331 Gene3D SET domain 35 312 IPR046341 -
Lja2g2974 331 SUPERFAMILY SET domain 76 324 IPR046341 -
Lja2g2974 331 ProSiteProfiles Post-SET domain profile. 311 327 IPR003616 -
Lja2g2974 331 SMART set_7 172 310 IPR001214 GO:0005515
Lja2g2974 331 SMART fbox_2 16 56 IPR001810 GO:0005515
Lja2g2974 331 ProSiteProfiles SET domain profile. 172 304 IPR001214 GO:0005515
Lja2g2974 331 SUPERFAMILY F-box domain 14 66 IPR036047 GO:0005515
Lja2g2974 331 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 19 320 - -
Lja2g2974 331 Pfam SET domain 183 304 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2974 Lja-Chr2 55038622 55044685 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2974 126 322 EF-hand Containing Proteins AT5G13960 30.000 6.14e-21 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja2g2974 SET 2.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2974 K11433 - gmx:100786871 458.759