Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2973 ATGTCCGAGCAACAAGGCGGCGATGGCACTTCCACAGTCAGGCGTAGAGGCGCCACTTCAAGGCGTGGCATGGCAACACCAGACATAGAGGCAGCAGCACCAACTGGACCATGTGGTGCTTGCAAGTTCTTGAGGAGGAAGTGCAGCAGTGAGTGCATCTTTGCACCCCACTTTGATCCGGACCAGGGTCCAGCAAGGTTTGCTGCTGTGCACAAGGTGTTTGGTGCTAGCAATGTGTCAAAGTTCCTGATGAATATTCCGATGAACCGCCGCGATGAAGCGGTGACAACTATCTGCTACGAGGCTCAAGCTAGGCTATCTGATCCTGTTTATGGTTGTGTCCCTACCATTCTGAACTTACAACAACAGGTTGCGTCTTTACAGGAACAGCTCACTATGCTGCAAACTCAGATAATACATGGTAGTTTGGCATATCCAAATGTTCTCCAGAGCACACAAGAGCAGCAACACACCAATATAGGGTTCCAGTCAGCGTACCCAAACTTCAACCCAGGTTTTGACTATGCAATGGAAACAGCACCCTCATCACACAACTTAGAGCCTGTTCAATTCTCTCAGTTGCCCAAATATGAGGAAGAAGATGAAGAAGAATGCAAGATTCCGCCGTTGTTGAACAATGATATAGTATTTCCCCGCCATTGA 663 0.4857 MSEQQGGDGTSTVRRRGATSRRGMATPDIEAAAPTGPCGACKFLRRKCSSECIFAPHFDPDQGPARFAAVHKVFGASNVSKFLMNIPMNRRDEAVTTICYEAQARLSDPVYGCVPTILNLQQQVASLQEQLTMLQTQIIHGSLAYPNVLQSTQEQQHTNIGFQSAYPNFNPGFDYAMETAPSSHNLEPVQFSQLPKYEEEDEEECKIPPLLNNDIVFPRH* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2973 220 PANTHER LOB DOMAIN CONTAINING PROTEIN 24 182 - -
Lja2g2973 220 Pfam Lateral organ boundaries (LOB) domain 37 135 IPR004883 -
Lja2g2973 220 MobiDBLite consensus disorder prediction 1 17 - -
Lja2g2973 220 Coils Coil 117 137 - -
Lja2g2973 220 ProSiteProfiles LOB domain profile. 36 138 IPR004883 -
Lja2g2973 220 MobiDBLite consensus disorder prediction 1 29 - -
Lja2g2973 220 PANTHER LOB DOMAIN-CONTAINING PROTEIN 20 24 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2973 Lja-Chr2 55037914 55039030 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2973 1 147 AS2 family AT3G03760 57.764 1.18e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja2g2973 LOB 7.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2973 - - aprc:113866578 245.358