Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2971 ATGAAAGATATTAAACAGAGAATGGGAAAAGATGTTGATGAAGTTAAGAAAACTGCTCATTTCATAAAGACCAAAGTTGAAGAACTCGACAAAGAGAATTTGGCAAATAGGCAGAAGCCTGGCTGTGGAAAAGGATCAGCTGTTGACAGGTCAAGAACAGCAACAACCATTTCCTTAAAAAAGAAACTGAAGGACAAGATGGCTGAATTTCAGAACCTGAGAGAAGCCATTCATGAAGAATATCGCGAGGTTGTTGAGAGACGTGTCTTTACAGTAACGGGCACAAGAGCTGATGAGGAGACAATTGACAGATTAATTGAAACCGGAGATAGTGAACAAATTTTCGAGAATGCAATTCAGGAACAGGGACGAGGCCAGTGCATGCGGGTGAGGAACATTATTGCTGTTTCTTGGACTATAAGCAAATAA 429 0.4033 MKDIKQRMGKDVDEVKKTAHFIKTKVEELDKENLANRQKPGCGKGSAVDRSRTATTISLKKKLKDKMAEFQNLREAIHEEYREVVERRVFTVTGTRADEETIDRLIETGDSEQIFENAIQEQGRGQCMRVRNIIAVSWTISK* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2971 142 SUPERFAMILY t-snare proteins 2 126 IPR010989 GO:0016020|GO:0016192
Lja2g2971 142 Coils Coil 60 83 - -
Lja2g2971 142 CDD SynN 1 118 IPR006011 GO:0016020
Lja2g2971 142 Pfam Syntaxin 1 129 IPR006011 GO:0016020
Lja2g2971 142 Gene3D - 1 135 - -
Lja2g2971 142 PANTHER - 1 129 - -
Lja2g2971 142 SMART SynN_4 1 82 IPR006011 GO:0016020
Lja2g2971 142 PANTHER SYNTAXIN 1 129 IPR045242 -
Lja2g2971 142 Coils Coil 12 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2971 Lja-Chr2 54865709 54882967 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2971 1 128 SNARE and Associated Proteins AT3G03800 75.000 8.09e-66 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2971 K08486 - gmx:100306329 218.779