Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2956 ATGGACGGTGAACAATGGTGCAATACATGCTCCAAAATGGTGAAGCCAATATTTGAAGCTGAGAACAAATGTCCATTCTGTGGTACAGAATTAATCACCGAGGCAATGGGAAGCATAAGCGACCAGAATGATGCTATCGATTTAAGGTCAGCCTGGGTTTTCTCACTTTATGCCCCAATTTTCCTTGGCTTAATGGGTGCTTTCAGCCCTTCTCTTGCAATCATTGGTGCACAAGAAAGCAGCACCTCAAGAGAGGATGAACCAGAAAGGGACAATGAACTTATACTTGGGAGAAGGAGGAGAGCCTCAACATACATGCTGCACATCTTTCGCAGTCTTCATGTGGGGATGGTGTCTGAATCAGAGAACATGGAAGACAACAATAGAAACATAGATGGCAGCAGCATACTTGTCATTGATCCATTCAATGAAGGGGGTGCATTGATTGTAAGAGGTCCTAACTTGAGCCACACAAGTAGTCCAAGTCCATATGAGAATGCTTCTGGTACCTTAAATGACTTTGTTGCAGGATCTGGGTTTGATTTGTTGTTACAACATTTGGCCCACATTGGCCCTAGTGGTTATGCTAGTGTGAACCCTCCAGCACAGAAGGTTGCAATTGAAGCAATGCCTAGTGTGACTAATGATGAAAAGTTTCAGTGCACCATATGTTTGGAGGATCTTGAGATTGGGATTGAAGCGAAAGAGATGCCATGCAAACATAAATTTCACGGTGATTGCATTATCTCATGGCTAAAGCTTCATAGTTCTTGTCCAGTTTGCAGGTTTCAGATTCCTTCTGAAGATTCTTCGAGTGTTGAGGCCAGTTTAGGAATCAGAAATGGGGAAAATCAGAACAGTGAGCTAGCTGGAGCTAGAGAGGAGAGAACTAGATATGGAAGGAGGAATTGGTTTCCAGTGCTGCAGTCATTTAATAATTTCCTTCCTTCTCCTTGA 957 0.4316 MDGEQWCNTCSKMVKPIFEAENKCPFCGTELITEAMGSISDQNDAIDLRSAWVFSLYAPIFLGLMGAFSPSLAIIGAQESSTSREDEPERDNELILGRRRRASTYMLHIFRSLHVGMVSESENMEDNNRNIDGSSILVIDPFNEGGALIVRGPNLSHTSSPSPYENASGTLNDFVAGSGFDLLLQHLAHIGPSGYASVNPPAQKVAIEAMPSVTNDEKFQCTICLEDLEIGIEAKEMPCKHKFHGDCIISWLKLHSSCPVCRFQIPSEDSSSVEASLGIRNGENQNSELAGAREERTRYGRRNWFPVLQSFNNFLPSP* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2956 318 SMART ring_2 221 261 IPR001841 -
Lja2g2956 318 Pfam Ring finger domain 220 262 IPR001841 -
Lja2g2956 318 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 2 316 - -
Lja2g2956 318 SUPERFAMILY RING/U-box 208 267 - -
Lja2g2956 318 ProSiteProfiles Zinc finger RING-type profile. 221 262 IPR001841 -
Lja2g2956 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 268 IPR013083 -
Lja2g2956 318 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2956 Lja-Chr2 51816430 51817386 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2956 81 266 C3H Transcription Factor Family AT1G26800 32.447 8.49e-22 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2956 K11982 - gmx:100790855 470.7