Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2935 ATGAACGACCTCATGACCAAGTCATTCACCAACTACGTAGATCTGAAGAGAGCAGCGATGAAAGACGTTGATCTCGAAGCAGGTCACCCTCCTCGTCCTTCATCCGATGTGGAACTAAGCTTAAGATCTTCAATGGACACTGACATGGGTCTCTTCCTGCAAGAAGCAGAGCGAGTGAGAACCGAAATCGGCGATCTCCGTGAAATTCTCGGAAAGCTCCAACAAGCCAACGAAGAGAGCAAGTCCCTTCACAAACCGGAAGCCCTGAAATCGCTCCAAACCAGAATCAACACCGACATTGTGACCCTCCTGAAGAAGGCGAGGGTGATCAGGACCCAGCTCGAAGAGATGGACCGCGCCAACGACGCTAACAGAAGGCTCTCAGGGCTCAAAGATGGGACGCCGGCGATTTACCGGACGCGAATTGCGGTGACGAATGGGCTGAGGAAGAAACTGAAGGAGCTGATGATGGAGTTTCAAGGGCTGAGGCAGAGGATGATGAGTGAGTACAGGGAAACTGTTGGGAGAAGGTATTTCACTGTGACAGGGGAAAATCCAGATGAAGAGGTGATTGAGAAGATCATTTCGAACGGTGATGAAGGAGGGTTTATGTTTTTGGGGAAGGCGGTGGAGGAGCACGGCAGAGGGAAGGTTCTGGAAACTGTGGCGGAGATACAGGACCGGCACGAGGGCGCAAAGGAGGTGGAGAAGAGTTTGTTAGAGCTGCATCAGGTGTTTCTGGACATGGCGGTGATGGTGGAGGCGCAGGGGGAGAAGATGGATGACATTGAGCACCACGTGCTTCATTCTTCTCACTATGTGAAGGATGGAACGAAGAACCTTCAGACAGCAAAGATGTACCAGAAGAGCAGCAGGAAGTGGATGTGTATTGGGATTATCATTCTTCTCATCCTCATTCTGGTTATTGTCATCCCCATCGTTACCAGTCTCACCAGTTCTTGA 963 0.5088 MNDLMTKSFTNYVDLKRAAMKDVDLEAGHPPRPSSDVELSLRSSMDTDMGLFLQEAERVRTEIGDLREILGKLQQANEESKSLHKPEALKSLQTRINTDIVTLLKKARVIRTQLEEMDRANDANRRLSGLKDGTPAIYRTRIAVTNGLRKKLKELMMEFQGLRQRMMSEYRETVGRRYFTVTGENPDEEVIEKIISNGDEGGFMFLGKAVEEHGRGKVLETVAEIQDRHEGAKEVEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVLHSSHYVKDGTKNLQTAKMYQKSSRKWMCIGIIILLILILVIVIPIVTSLTSS* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2935 320 SUPERFAMILY t-snare proteins 47 277 IPR010989 GO:0016020|GO:0016192
Lja2g2935 320 PANTHER SYNTAXIN 5 313 IPR045242 -
Lja2g2935 320 Pfam SNARE domain 259 310 IPR000727 -
Lja2g2935 320 Pfam Syntaxin 52 257 IPR006011 GO:0016020
Lja2g2935 320 Gene3D - 217 317 - -
Lja2g2935 320 CDD SynN 49 196 IPR006011 GO:0016020
Lja2g2935 320 ProSitePatterns Syntaxin / epimorphin family signature. 228 268 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lja2g2935 320 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 222 284 IPR000727 -
Lja2g2935 320 Gene3D - 49 177 - -
Lja2g2935 320 PANTHER SYNTAXIN-RELATED PROTEIN KNOLLE 5 313 - -
Lja2g2935 320 SMART tSNARE_6 217 284 IPR000727 -
Lja2g2935 320 Coils Coil 145 165 - -
Lja2g2935 320 CDD SNARE_syntaxin1-like 221 283 - -
Lja2g2935 320 SMART SynN_4 44 171 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2935 Lja-Chr2 50040222 50041722 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2935 1 320 SNARE and Associated Proteins AT1G08560 62.112 1.95e-129 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2935 K08486 - gmx:100816016 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2935 2 50040222 50041722 Lja2g2935 2 50040222 50041722 ECH