Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2932 ATGAACACCAGCAATAGAAGCACCCTCTTTCCAATTCCAGAAGGGAAAATAAGCACTTCTGATCATCAATTTGTTGAGGGGCAGGACTCATCTAAGTTTATACTTCAAGGCAATGAAAGGAAAAAACACTATAGAGGTGTGAGGCAGAGACCTTGGGGAAAATGGGCTGCTGAAATTAGAGACCCTAAAAAAGCAGCAAGAGTGTGGCTTGGGACGTTTGATACAGCAGAGGCTGCAGCAACCGCTTATGATACTGCAGCATTGAAGTTTAAAGGAAACAAAGCCAAGCTCAATTTCCCTGAACGTGTTGCTAATTTGCTACCACCCTCATCACCACCACCTAACAATGTTGCTTCAGCTTCAGCAGCTTCTTCACAATCATCACTCCAAAAAAATCCCCCACTATTATCATCTTCTGAAGAAGGATTTCCGAACCTAATGCAGTACGCGAGGGTTCTTTGTAGCAGGGATGATGAAGATCTTCAACGCGCTGCATCAGGTCTTTATAACTATCATCATAACAATGAGCAATCAGTTTATGATTCACCGGTACCGTTTTTCTCAACACCAGCAGCAATGCCTTCTTCAAGTTCTAAGGATGTTGTGTCGCCTGGTCAATATCAAATTGGAGATTTTGGTTCTTATTTTTGTAATAAAGGTAGTTTCGATGAAAGAAACACGAGGGGGACATAG 693 0.4228 MNTSNRSTLFPIPEGKISTSDHQFVEGQDSSKFILQGNERKKHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAATAYDTAALKFKGNKAKLNFPERVANLLPPSSPPPNNVASASAASSQSSLQKNPPLLSSSEEGFPNLMQYARVLCSRDDEDLQRAASGLYNYHHNNEQSVYDSPVPFFSTPAAMPSSSSKDVVSPGQYQIGDFGSYFCNKGSFDERNTRGT* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2932 230 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
Lja2g2932 230 MobiDBLite consensus disorder prediction 104 141 - -
Lja2g2932 230 CDD AP2 42 101 IPR001471 GO:0003700|GO:0006355
Lja2g2932 230 Pfam AP2 domain 43 92 IPR001471 GO:0003700|GO:0006355
Lja2g2932 230 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Lja2g2932 230 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
Lja2g2932 230 SUPERFAMILY DNA-binding domain 43 101 IPR016177 GO:0003677
Lja2g2932 230 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
Lja2g2932 230 PANTHER DNA-BINDING DOMAIN 16 214 IPR044808 GO:0003700|GO:0009873
Lja2g2932 230 MobiDBLite consensus disorder prediction 116 141 - -
Lja2g2932 230 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 16 214 - -
Lja2g2932 230 Gene3D AP2/ERF domain 42 102 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2932 Lja-Chr2 49947451 49948899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2932 36 169 AP2-EREBP Transcription Factor Family AT5G13330 53.237 2.70e-39 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja2g2932 AP2 5.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2932 - - mtr:MTR_6g033255 205.682
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2932 2 49947451 49948899 Lja1g1677 1 18513130 18515367 PCT