Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lja2g2932 | ATGAACACCAGCAATAGAAGCACCCTCTTTCCAATTCCAGAAGGGAAAATAAGCACTTCTGATCATCAATTTGTTGAGGGGCAGGACTCATCTAAGTTTATACTTCAAGGCAATGAAAGGAAAAAACACTATAGAGGTGTGAGGCAGAGACCTTGGGGAAAATGGGCTGCTGAAATTAGAGACCCTAAAAAAGCAGCAAGAGTGTGGCTTGGGACGTTTGATACAGCAGAGGCTGCAGCAACCGCTTATGATACTGCAGCATTGAAGTTTAAAGGAAACAAAGCCAAGCTCAATTTCCCTGAACGTGTTGCTAATTTGCTACCACCCTCATCACCACCACCTAACAATGTTGCTTCAGCTTCAGCAGCTTCTTCACAATCATCACTCCAAAAAAATCCCCCACTATTATCATCTTCTGAAGAAGGATTTCCGAACCTAATGCAGTACGCGAGGGTTCTTTGTAGCAGGGATGATGAAGATCTTCAACGCGCTGCATCAGGTCTTTATAACTATCATCATAACAATGAGCAATCAGTTTATGATTCACCGGTACCGTTTTTCTCAACACCAGCAGCAATGCCTTCTTCAAGTTCTAAGGATGTTGTGTCGCCTGGTCAATATCAAATTGGAGATTTTGGTTCTTATTTTTGTAATAAAGGTAGTTTCGATGAAAGAAACACGAGGGGGACATAG | 693 | 0.4228 | MNTSNRSTLFPIPEGKISTSDHQFVEGQDSSKFILQGNERKKHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAATAYDTAALKFKGNKAKLNFPERVANLLPPSSPPPNNVASASAASSQSSLQKNPPLLSSSEEGFPNLMQYARVLCSRDDEDLQRAASGLYNYHHNNEQSVYDSPVPFFSTPAAMPSSSSKDVVSPGQYQIGDFGSYFCNKGSFDERNTRGT* | 231 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lja2g2932 | 230 | ProSiteProfiles | AP2/ERF domain profile. | 43 | 100 | IPR001471 | GO:0003700|GO:0006355 | |
Lja2g2932 | 230 | MobiDBLite | consensus disorder prediction | 104 | 141 | - | - | |
Lja2g2932 | 230 | CDD | AP2 | 42 | 101 | IPR001471 | GO:0003700|GO:0006355 | |
Lja2g2932 | 230 | Pfam | AP2 domain | 43 | 92 | IPR001471 | GO:0003700|GO:0006355 | |
Lja2g2932 | 230 | PRINTS | Ethylene responsive element binding protein signature | 44 | 55 | IPR001471 | GO:0003700|GO:0006355 | |
Lja2g2932 | 230 | PRINTS | Ethylene responsive element binding protein signature | 66 | 82 | IPR001471 | GO:0003700|GO:0006355 | |
Lja2g2932 | 230 | SUPERFAMILY | DNA-binding domain | 43 | 101 | IPR016177 | GO:0003677 | |
Lja2g2932 | 230 | SMART | rav1_2 | 43 | 106 | IPR001471 | GO:0003700|GO:0006355 | |
Lja2g2932 | 230 | PANTHER | DNA-BINDING DOMAIN | 16 | 214 | IPR044808 | GO:0003700|GO:0009873 | |
Lja2g2932 | 230 | MobiDBLite | consensus disorder prediction | 116 | 141 | - | - | |
Lja2g2932 | 230 | PANTHER | AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 | 16 | 214 | - | - | |
Lja2g2932 | 230 | Gene3D | AP2/ERF domain | 42 | 102 | IPR036955 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lja2g2932 | Lja-Chr2 | 49947451 | 49948899 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lja2g2932 | 36 | 169 | AP2-EREBP Transcription Factor Family | AT5G13330 | 53.237 | 2.70e-39 | 133 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Lja2g2932 | AP2 | 5.5e-14 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lja2g2932 | - | - | mtr:MTR_6g033255 | 205.682 |